2KV3

Human Regenerating Gene Type IV (REG IV) PROTEIN, P91S mutant


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 150 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation   3D Report Full Report


This is version 1.4 of the entry. See complete history


Literature

Human RegIV protein adopts a typical C-type lectin fold but binds mannan with two calcium-independent sites.

Ho, M.R.Lou, Y.C.Wei, S.Y.Luo, S.C.Lin, W.C.Lyu, P.C.Chen, C.

(2010) J Mol Biol 402: 682-695

  • DOI: https://doi.org/10.1016/j.jmb.2010.07.061
  • Primary Citation of Related Structures:  
    2KV3

  • PubMed Abstract: 

    Human RegIV protein, which contains a sequence motif homologous to calcium-dependent (C-type) lectin-like domain, is highly expressed in mucosa cells of the gastrointestinal tract during pathogen infection and carcinogenesis and may be applied in both diagnosis and treatment of gastric and colon cancers. Here, we provide evidence that, unlike other C-type lectins, human RegIV binds to polysaccharides, mannan, and heparin in the absence of calcium. To elucidate the structural basis for carbohydrate recognition by NMR, we generated the mutant with Pro91 replaced by Ser (hRegIV-P91S) and showed that the structural property and carbohydrate binding ability of hRegIV-P91S are almost identical with those of wild-type protein. The solution structure of hRegIV-P91S was determined, showing that it adopts a typical fold of C-type lectin. Based on the chemical shift perturbations of amide resonances, two calcium-independent mannan-binding sites were proposed. One site is similar to the calcium-independent sugar-binding site on human RegIII and Langerin. Interestingly, the other site is adjacent to the conserved calcium-dependent site at position Ca-2 of typical C-type lectins. Moreover, model-free analysis of (15)N relaxation parameters and simplified Carr-Purcell-Meiboom-Gill relaxation dispersion experiments showed that a slow microsecond-to-millisecond time-scale backbone motion is involved in mannan binding by this site, suggesting a potential role for specific carbohydrate recognition. Our findings shed light on the sugar-binding mode of Reg family proteins, and we postulate that Reg family proteins evolved to bind sugar without calcium to keep the carbohydrate recognition activity under low-pH environments in the gastrointestinal tract.


  • Organizational Affiliation

    Institute of Biomedical Sciences, Academia Sinica, Nankang, Taipei 115, Taiwan, ROC.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Regenerating islet-derived protein 4131Homo sapiensMutation(s): 1 
Gene Names: REG4
UniProt & NIH Common Fund Data Resources
Find proteins for Q9BYZ8 (Homo sapiens)
Explore Q9BYZ8 
Go to UniProtKB:  Q9BYZ8
PHAROS:  Q9BYZ8
GTEx:  ENSG00000134193 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9BYZ8
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 150 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2010-08-18
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2019-12-18
    Changes: Data collection, Database references, Derived calculations
  • Version 1.3: 2021-11-10
    Changes: Database references
  • Version 1.4: 2024-10-16
    Changes: Data collection, Structure summary