2ND5 | pdb_00002nd5

Lysine dimethylated FKBP12

• PDB DOI: https://doi.org/10.2210/pdb2ND5/pdb
• BMRB: 26047

• Classification: ISOMERASE
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2016-05-05 Released: 2017-05-17 
• Deposition Author(s): Hattori, Y., Sebera, J., Sychrovsky, V., Furuita, K., Sugiki, T., Ohki, I., Ikegami, T., Kobayashi, N., Tanaka, Y., Fujiwara, T., Kojima, C.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: structures with the lowest energy 

Literature

NMR Observation of Protein Surface Salt Bridges at Neutral pH

Hattori, Y., Sebera, J., Sychrovsky, V., Furuita, K., Sugiki, T., Ohki, I., Ikegami, T., Kobayashi, N., Tanaka, Y., Fujiwara, T., Kojima, C.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 12.43 kDa 
• Atom Count: 872 
• Modelled Residue Count: 111 
• Deposited Residue Count: 111 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Peptidyl-prolyl cis-trans isomerase FKBP1A	A	111	Homo sapiens	Mutation(s): 0  Gene Names: FKBP1A, FKBP1, FKBP12 EC: 5.2.1.8
UniProt & NIH Common Fund Data Resources
Find proteins for P62942 (Homo sapiens) Explore P62942  Go to UniProtKB:  P62942
PHAROS:  P62942 GTEx:  ENSG00000088832

Small Molecules

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MLY	A	L-PEPTIDE LINKING	C8 H18 N2 O2		LYS

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: structures with the lowest energy 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2017-05-17 
Deposition Author(s): Hattori, Y., Sebera, J., Sychrovsky, V., Furuita, K., Sugiki, T., Ohki, I., Ikegami, T., Kobayashi, N., Tanaka, Y., Fujiwara, T., Kojima, C.

Revision History  

• Version 1.0: 2017-05-17
  Type: Initial release
  
• Version 1.1: 2025-03-26
  Changes: Data collection, Database references, Derived calculations, Structure summary