X-ray structure of Ca(2+)-S100B with human RAGE-derived W72 peptide
Jensen, J.L., Colbert, C.L.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Protein S100-B | 92 | Homo sapiens | Mutation(s): 0  Gene Names: S100B | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P04271 (Homo sapiens) Explore P04271  Go to UniProtKB:  P04271 | |||||
PHAROS:  P04271 GTEx:  ENSG00000160307  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P04271 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by: Sequence | 3D Structure
Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Advanced glycosylation end product-specific receptor | C [auth P] | 15 | Homo sapiens | Mutation(s): 0  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q15109 (Homo sapiens) Explore Q15109  Go to UniProtKB:  Q15109 | |||||
PHAROS:  Q15109 GTEx:  ENSG00000204305  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q15109 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
GOL Query on GOL | F [auth A] G [auth A] H [auth A] I [auth A] J [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
CA Query on CA | D [auth A], E [auth A], K [auth B], L [auth B] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 35.089 | α = 90 |
b = 59.824 | β = 111.65 |
c = 47.563 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
XDS | data reduction |
PHASER | phasing |
SCALA | data scaling |