5VOT

Structure of AMPA receptor-TARP complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.7 of the entry. See complete history


Literature

Activation and Desensitization Mechanism of AMPA Receptor-TARP Complex by Cryo-EM.

Chen, S.Zhao, Y.Wang, Y.Shekhar, M.Tajkhorshid, E.Gouaux, E.

(2017) Cell 170: 1234-1246.e14

  • DOI: https://doi.org/10.1016/j.cell.2017.07.045
  • Primary Citation of Related Structures:  
    5VOT, 5VOU, 5VOV

  • PubMed Abstract: 

    AMPA receptors mediate fast excitatory neurotransmission in the mammalian brain and transduce the binding of presynaptically released glutamate to the opening of a transmembrane cation channel. Within the postsynaptic density, however, AMPA receptors coassemble with transmembrane AMPA receptor regulatory proteins (TARPs), yielding a receptor complex with altered gating kinetics, pharmacology, and pore properties. Here, we elucidate structures of the GluA2-TARP γ2 complex in the presence of the partial agonist kainate or the full agonist quisqualate together with a positive allosteric modulator or with quisqualate alone. We show how TARPs sculpt the ligand-binding domain gating ring, enhancing kainate potency and diminishing the ensemble of desensitized states. TARPs encircle the receptor ion channel, stabilizing M2 helices and pore loops, illustrating how TARPs alter receptor pore properties. Structural and computational analysis suggests the full agonist and modulator complex harbors an ion-permeable channel gate, providing the first view of an activated AMPA receptor.


  • Organizational Affiliation

    Vollum Institute, Oregon Health & Science University, Portland, OR 97239, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Glutamate receptor 2A,
B [auth C],
C [auth D],
H [auth B]
889Rattus norvegicusMutation(s): 0 
Gene Names: Gria2Glur2
Membrane Entity: Yes 
UniProt
Find proteins for P19491 (Rattus norvegicus)
Explore P19491 
Go to UniProtKB:  P19491
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP19491
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Voltage-dependent calcium channel gamma-2 subunitD [auth E],
E [auth F],
F [auth G],
G [auth H]
323Rattus norvegicusMutation(s): 0 
Gene Names: Cacng2Stg
Membrane Entity: Yes 
UniProt
Find proteins for Q71RJ2 (Rattus norvegicus)
Explore Q71RJ2 
Go to UniProtKB:  Q71RJ2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ71RJ2
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX
RECONSTRUCTIONRELION

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of Neurological Disorders and Stroke (NIH/NINDS)United StatesNS-038631
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesP41-GM104601
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesU54-GM087519

Revision History  (Full details and data files)

  • Version 1.0: 2017-07-12
    Type: Initial release
  • Version 1.1: 2017-09-20
    Changes: Author supporting evidence, Data collection
  • Version 1.2: 2017-10-04
    Changes: Database references
  • Version 1.3: 2017-11-08
    Changes: Derived calculations
  • Version 1.4: 2018-07-18
    Changes: Data collection
  • Version 1.5: 2019-11-06
    Changes: Data collection, Other, Structure summary
  • Version 1.6: 2019-12-18
    Changes: Author supporting evidence
  • Version 1.7: 2024-10-23
    Changes: Data collection, Database references, Structure summary