6L6P

hASIC2a co-crystallized with Mamb-1

PDB DOI: https://doi.org/10.2210/pdb6L6P/pdb

Classification: TRANSPORT PROTEIN
Organism(s): Homo sapiens
Expression System: Spodoptera frugiperda
Mutation(s): No
Membrane Protein: Yes OPMPDBTMMemProtMD

Deposited: 2019-10-29 Released: 2020-11-04
Deposition Author(s): Lei, F., Jian, S.
Funding Organization(s): National Natural Science Foundation of China

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.08 Å
R-Value Free: 0.282
R-Value Work: 0.231
R-Value Observed: 0.234

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

hASIC2a co-crystallized with Mamb-1

Lei, F., Jian, S.

To be published.

Macromolecule Content

Total Structure Weight: 156.76 kDa
Atom Count: 10,369
Modelled Residue Count: 1,297
Deposited Residue Count: 1,389
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Acid-sensing ion channel 2	A, B, C	463	Homo sapiens	Mutation(s): 0 Gene Names: ASIC2, ACCN, ACCN1, BNAC1, MDEG Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for Q16515 (Homo sapiens) Explore Q16515 Go to UniProtKB: Q16515
PHAROS: Q16515 GTEx: ENSG00000108684
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q16515
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.08 Å
R-Value Free: 0.282
R-Value Work: 0.231
R-Value Observed: 0.234
Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 109.863	α = 90
b = 155.664	β = 90
c = 156.644	γ = 90

Software Package:

Software Name	Purpose
Aimless	data scaling
REFMAC	refinement
PDB_EXTRACT	data extraction
XDS	data reduction
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2020-11-04

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China	China	--

Revision History (Full details and data files)

Version 1.0: 2020-11-04
Type: Initial release
Version 1.1: 2024-11-20
Changes: Data collection, Database references, Refinement description, Structure summary

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.