6THA
Crystal structure of human sugar transporter GLUT1 (SLC2A1) in the inward conformation
- PDB DOI: https://doi.org/10.2210/pdb6THA/pdb
- Classification: MEMBRANE PROTEIN
- Organism(s): Homo sapiens
- Expression System: Saccharomyces cerevisiae
- Mutation(s): No 
- Membrane Protein: Yes  PDBTMMemProtMDmpstruc
- Deposited: 2019-11-19 Released: 2020-11-25 
- Funding Organization(s): Danish Council for Independent Research, European Research Council, Other private
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.40 Å
- R-Value Free: 0.229 
- R-Value Work: 0.204 
- R-Value Observed: 0.206 
This is version 1.2 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Solute carrier family 2, facilitated glucose transporter member 1 | 496 | Homo sapiens | Mutation(s): 0  Gene Names: SLC2A1, GLUT1 Membrane Entity: Yes  | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P11166 (Homo sapiens) Explore P11166  Go to UniProtKB:  P11166 | |||||
PHAROS:  P11166 GTEx:  ENSG00000117394  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P11166 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
Ligands 3 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
P33 Query on P33 | D [auth A] | 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL C14 H30 O8 XPJRQAIZZQMSCM-UHFFFAOYSA-N | |||
BNG (Subject of Investigation/LOI) Query on BNG | B [auth A], C [auth A] | nonyl beta-D-glucopyranoside C15 H30 O6 QFAPUKLCALRPLH-UXXRCYHCSA-N | |||
CL (Subject of Investigation/LOI) Query on CL | E [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.40 Å
- R-Value Free: 0.229 
- R-Value Work: 0.204 
- R-Value Observed: 0.206 
- Space Group: C 1 2 1
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 120 | α = 90 |
b = 102.18 | β = 98.89 |
c = 69 | γ = 90 |
Software Name | Purpose |
---|---|
PHENIX | refinement |
XDS | data reduction |
XSCALE | data scaling |
PHASER | phasing |
PDB_EXTRACT | data extraction |
Entry History & Funding Information
Deposition Data
- Released Date: 2020-11-25  Deposition Author(s): Pedersen, B.P., Paulsen, P.A., Custodio, T.F.
Funding Organization | Location | Grant Number |
---|---|---|
Danish Council for Independent Research | Denmark | DFF-4002-00052 |
European Research Council | Denmark | 637372 |
Other private | Denmark | CF17-0180 |
Revision History (Full details and data files)
- Version 1.0: 2020-11-25
Type: Initial release - Version 1.1: 2021-06-09
Changes: Database references, Refinement description - Version 1.2: 2024-01-24
Changes: Data collection, Database references, Refinement description