6V22

Cryo-EM structure of Ca2+-bound hsSlo1-beta4 channel complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Models: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.4 of the entry. See complete history


Literature

Molecular structures of the human Slo1 K + channel in complex with beta 4.

Tao, X.MacKinnon, R.

(2019) Elife 8

  • DOI: https://doi.org/10.7554/eLife.51409
  • Primary Citation of Related Structures:  
    6V22, 6V35, 6V38, 6V3G

  • PubMed Abstract: 

    Slo1 is a Ca 2+ - and voltage-activated K + channel that underlies skeletal and smooth muscle contraction, audition, hormone secretion and neurotransmitter release. In mammals, Slo1 is regulated by auxiliary proteins that confer tissue-specific gating and pharmacological properties. This study presents cryo-EM structures of Slo1 in complex with the auxiliary protein, β4. Four β4, each containing two transmembrane helices, encircle Slo1, contacting it through helical interactions inside the membrane. On the extracellular side, β4 forms a tetrameric crown over the pore. Structures with high and low Ca 2+ concentrations show that identical gating conformations occur in the absence and presence of β4, implying that β4 serves to modulate the relative stabilities of 'pre-existing' conformations rather than creating new ones. The effects of β4 on scorpion toxin inhibition kinetics are explained by the crown, which constrains access but does not prevent binding.


  • Organizational Affiliation

    Laboratory of Molecular Neurobiology and Biophysics, The Rockefeller University, Howard Hughes Medical Institute, New York, United States.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Calcium-activated potassium channel subunit alpha-1A,
C [auth B],
E [auth C],
G [auth D]
1,065Homo sapiensMutation(s): 0 
Gene Names: KCNMA1KCNMASLO
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for Q12791 (Homo sapiens)
Explore Q12791 
Go to UniProtKB:  Q12791
PHAROS:  Q12791
GTEx:  ENSG00000156113 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ12791
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Calcium-activated potassium channel subunit beta-4B [auth E],
D [auth F],
F [auth G],
H
219Homo sapiensMutation(s): 0 
Gene Names: KCNMB4
Membrane Entity: Yes 
UniProt & NIH Common Fund Data Resources
Find proteins for Q86W47 (Homo sapiens)
Explore Q86W47 
Go to UniProtKB:  Q86W47
PHAROS:  Q86W47
GTEx:  ENSG00000135643 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ86W47
Glycosylation
Glycosylation Sites: 2Go to GlyGen: Q86W47-1
Sequence Annotations
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  • Reference Sequence
Small Molecules
Ligands 6 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
POV
Query on POV

Download Ideal Coordinates CCD File 
AA [auth A]
AC [auth G]
AD [auth H]
BA [auth A]
BC [auth G]
AA [auth A],
AC [auth G],
AD [auth H],
BA [auth A],
BC [auth G],
BD [auth H],
CA [auth A],
CB [auth F],
CC [auth G],
DA [auth A],
DB [auth F],
DC [auth G],
EA [auth E],
EB [auth F],
FA [auth E],
FB [auth F],
GA [auth E],
GC [auth D],
HA [auth E],
HC [auth D],
IB [auth C],
IC [auth D],
JB [auth C],
JC [auth D],
KA [auth B],
KB [auth C],
KC [auth D],
L [auth A],
LA [auth B],
LB [auth C],
M [auth A],
MA [auth B],
MB [auth C],
N [auth A],
NA [auth B],
O [auth A],
OA [auth B],
OC [auth D],
P [auth A],
PC [auth D],
Q [auth A],
QB [auth C],
QC [auth D],
RB [auth C],
RC [auth D],
SA [auth B],
SB [auth C],
SC [auth D],
TA [auth B],
TB [auth C],
TC [auth D],
UA [auth B],
UB [auth C],
VA [auth B],
VB [auth C],
WA [auth B],
XA [auth B],
YC [auth H],
Z [auth A],
ZC [auth H]
(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate
C42 H82 N O8 P
WTJKGGKOPKCXLL-PFDVCBLKSA-N
CLR
Query on CLR

Download Ideal Coordinates CCD File 
AB [auth B]
BB [auth B]
R [auth A]
S [auth A]
T [auth A]
AB [auth B],
BB [auth B],
R [auth A],
S [auth A],
T [auth A],
U [auth A],
UC [auth D],
VC [auth D],
WB [auth C],
WC [auth D],
XB [auth C],
XC [auth D],
YA [auth B],
YB [auth C],
ZA [auth B],
ZB [auth C]
CHOLESTEROL
C27 H46 O
HVYWMOMLDIMFJA-DPAQBDIFSA-N
NAG
Query on NAG

Download Ideal Coordinates CCD File 
CD [auth H]
DD [auth H]
EC [auth G]
FC [auth G]
GB [auth F]
CD [auth H],
DD [auth H],
EC [auth G],
FC [auth G],
GB [auth F],
HB [auth F],
IA [auth E],
JA [auth E]
2-acetamido-2-deoxy-beta-D-glucopyranose
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
CA (Subject of Investigation/LOI)
Query on CA

Download Ideal Coordinates CCD File 
J [auth A]
K [auth A]
MC [auth D]
NC [auth D]
OB [auth C]
J [auth A],
K [auth A],
MC [auth D],
NC [auth D],
OB [auth C],
PB [auth C],
QA [auth B],
RA [auth B]
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
K
Query on K

Download Ideal Coordinates CCD File 
V [auth A],
W [auth A],
X [auth A],
Y [auth A]
POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
MG
Query on MG

Download Ideal Coordinates CCD File 
I [auth A],
LC [auth D],
NB [auth C],
PA [auth B]
MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.20 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONFREALIGN9.11
MODEL REFINEMENTPHENIX1.16
MODEL REFINEMENTPHENIX1.16

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM43949

Revision History  (Full details and data files)

  • Version 1.0: 2019-12-25
    Type: Initial release
  • Version 1.1: 2020-03-25
    Changes: Data collection, Data processing
  • Version 1.2: 2020-07-29
    Type: Remediation
    Reason: Carbohydrate remediation
    Changes: Data collection, Derived calculations, Structure summary
  • Version 1.3: 2020-10-07
    Changes: Database references, Structure summary
  • Version 1.4: 2024-11-13
    Changes: Data collection, Database references, Refinement description, Structure summary