6VC1

Octreotide oxalate


Experimental Data Snapshot

  • Method: POWDER DIFFRACTION

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

New perspectives in macromolecular powder diffraction using single-photon-counting strip detectors: high-resolution structure of the pharmaceutical peptide octreotide.

Spiliopoulou, M.Karavassili, F.Triandafillidis, D.P.Valmas, A.Fili, S.Kosinas, C.Barlos, K.Barlos, K.K.Morin, M.Reinle-Schmitt, M.L.Gozzo, F.Margiolaki, I.

(2021) Acta Crystallogr A Found Adv 77: 186-195

  • DOI: https://doi.org/10.1107/S2053273321001698
  • Primary Citation of Related Structures:  
    6VC1

  • PubMed Abstract: 

    Advances in instrumentation, as well as the development of powerful crystallographic software have significantly facilitated the collection of high-resolution diffraction data and have made X-ray powder diffraction (XRPD) particularly useful for the extraction of structural information; this is true even for complex molecules, especially when combined with synchrotron radiation. In this study, in-line with past instrumental profile studies, an improved data collection strategy exploiting the MYTHEN II detector system together with significant beam focusing and tailored data collection options was introduced and optimized for protein samples at the Material Science beamline at the Swiss Light Source. Polycrystalline precipitates of octreotide, a somatostatin analog of particular pharmaceutical interest, were examined with this novel approach. XRPD experiments resulted in high angular and d-spacing (1.87 Å) resolution data, from which electron-density maps of enhanced quality were extracted, revealing the molecule's structural properties. Since microcrystalline precipitates represent a viable alternative for administration of therapeutic macromolecules, XRPD has been acknowledged as the most applicable tool for examining a wide spectrum of physicochemical properties of such materials and performing studies ranging from phase identification to complete structural characterization.


  • Organizational Affiliation

    Department of Biology, Section of Genetics, Cell Biology and Development, University of Patras, Patras, GR-26500, Greece.


Macromolecules

Find similar proteins by:  Sequence   |   3D Structure  

Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Octreotide
A, B, C
8unidentifiedMutation(s): 0 
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
OXL
Query on OXL

Download Ideal Coordinates CCD File 
D [auth A]OXALATE ION
C2 O4
MUBZPKHOEPUJKR-UHFFFAOYSA-L
Experimental Data & Validation

Experimental Data

  • Method: POWDER DIFFRACTION
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 18.529α = 90
b = 30.288β = 90
c = 39.731γ = 90
Software Package:
Software NamePurpose
GSASrefinement

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Hellenic Foundation for Research and Innovation (HFRI)Greece3051
General Secretariat for Research and Technology (GSRT)European Union--

Revision History  (Full details and data files)

  • Version 1.0: 2020-12-23
    Type: Initial release
  • Version 1.1: 2021-05-19
    Changes: Database references
  • Version 1.2: 2024-11-06
    Changes: Author supporting evidence, Data collection, Database references, Structure summary