6ZWO

cryo-EM structure of human mTOR complex 2, focused on one half


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

The 3.2- angstrom resolution structure of human mTORC2.

Scaiola, A.Mangia, F.Imseng, S.Boehringer, D.Berneiser, K.Shimobayashi, M.Stuttfeld, E.Hall, M.N.Ban, N.Maier, T.

(2020) Sci Adv 6

  • DOI: https://doi.org/10.1126/sciadv.abc1251
  • Primary Citation of Related Structures:  
    6ZWM, 6ZWO

  • PubMed Abstract: 

    The protein kinase mammalian target of rapamycin (mTOR) is the central regulator of cell growth. Aberrant mTOR signaling is linked to cancer, diabetes, and neurological disorders. mTOR exerts its functions in two distinct multiprotein complexes, mTORC1 and mTORC2. Here, we report a 3.2-Å resolution cryo-EM reconstruction of mTORC2. It reveals entangled folds of the defining Rictor and the substrate-binding SIN1 subunits, identifies the carboxyl-terminal domain of Rictor as the source of the rapamycin insensitivity of mTORC2, and resolves mechanisms for mTORC2 regulation by complex destabilization. Two previously uncharacterized small-molecule binding sites are visualized, an inositol hexakisphosphate (InsP6) pocket in mTOR and an mTORC2-specific nucleotide binding site in Rictor, which also forms a zinc finger. Structural and biochemical analyses suggest that InsP6 and nucleotide binding do not control mTORC2 activity directly but rather have roles in folding or ternary interactions. These insights provide a firm basis for studying mTORC2 signaling and for developing mTORC2-specific inhibitors.


  • Organizational Affiliation

    Institute for Molecular Biology and Biophysics, ETH Zurich, Zurich, Switzerland.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Serine/threonine-protein kinase mTORA [auth B]2,549Homo sapiensMutation(s): 0 
Gene Names: MTORFRAPFRAP1FRAP2RAFT1RAPT1
EC: 2.7.11.1
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Find proteins for P42345 (Homo sapiens)
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PHAROS:  P42345
GTEx:  ENSG00000198793 
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UniProt GroupP42345
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Target of rapamycin complex subunit LST8B [auth D]326Homo sapiensMutation(s): 0 
Gene Names: MLST8GBLLST8
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Find proteins for Q9BVC4 (Homo sapiens)
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PHAROS:  Q9BVC4
GTEx:  ENSG00000167965 
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UniProt GroupQ9BVC4
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Rapamycin-insensitive companion of mTORC [auth F]1,708Homo sapiensMutation(s): 0 
Gene Names: RICTORKIAA1999
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Find proteins for Q6R327 (Homo sapiens)
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PHAROS:  Q6R327
GTEx:  ENSG00000164327 
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Target of rapamycin complex 2 subunit MAPKAP1D [auth H]521Homo sapiensMutation(s): 0 
Gene Names: MAPKAP1MIP1SIN1
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Find proteins for Q9BPZ7 (Homo sapiens)
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PHAROS:  Q9BPZ7
GTEx:  ENSG00000119487 
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UniProt GroupQ9BPZ7
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Swiss National Science FoundationSwitzerland179323
Swiss National Science FoundationSwitzerland177084
Swiss National Science Foundation138262

Revision History  (Full details and data files)

  • Version 1.0: 2020-11-18
    Type: Initial release