8JRE

Cryo-EM structure of a designed AAV8-based vector

• PDB DOI: https://doi.org/10.2210/pdb8JRE/pdb
• EM Map EMD-36594: EMDB EMDataResource

• Classification: VIRUS
• Organism(s): Adeno-associated virus - 8
• Expression System: Homo sapiens
• Mutation(s): No 


• Deposited: 2023-06-16 Released: 2024-04-24 
• Deposition Author(s): Ke, X., Luo, S., Zheng, Q., Jiang, H., Liu, F., Sun, X.
• Funding Organization(s): Not funded

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 2.08 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

Structural, biophysical, and functional evaluation of a novel rationally designed AAV8-based vector for efficacious treatment of nAMD in the primate model of Laser-induced CNV

Ke, X., Luo, S., Zheng, Q., Jiang, H., Liu, F., Sun, X.

To be published.

Biological Assembly 1  

Global Symmetry: Icosahedral - I  (Explore in 3D)
Global Stoichiometry: Homo 60-mer - A60 

Biological assembly 1 assigned by authors and generated by (software)

Macromolecule Content

• Total Structure Weight: 3,556.21 kDa 
• Atom Count: 251,280 
• Modelled Residue Count: 31,560 
• Deposited Residue Count: 31,560 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Capsid protein	A [auth 1], AA [auth 2], AB [auth s], B [auth A], BA [auth 3], BB [auth t], C [auth B], CA [auth 4], CB [auth u], D [auth C], DA [auth 5], DB [auth v], E [auth D], EA [auth 6], EB [auth w], F [auth E], FA [auth 7], FB [auth x], G [auth F], GA [auth 8], GB [auth y], H [auth G], HA [auth 9], HB [auth z], I [auth H], IA [auth a], J [auth I], JA [auth b], K [auth J], KA [auth c], L [auth K], LA [auth d], M [auth L], MA [auth e], N [auth M], NA [auth f], O [auth N], OA [auth g], P [auth O], PA [auth h], Q [auth P], QA [auth i], R [auth Q], RA [auth j], S [auth R], SA [auth l], T [auth S], TA [auth k], U [auth T], UA [auth m], V, VA [auth n], W, WA [auth o], X, XA [auth p], Y, YA [auth q], Z, ZA [auth r]	526	Adeno-associated virus - 8	Mutation(s): 0
UniProt
Find proteins for Q8JQF8 (Adeno-associated virus - 8) Explore Q8JQF8  Go to UniProtKB:  Q8JQF8

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 2.08 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-04-24 
Deposition Author(s): Ke, X., Luo, S., Zheng, Q., Jiang, H., Liu, F., Sun, X.

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Funding Organization	Location	Grant Number
Not funded		--

Revision History  

• Version 1.0: 2024-04-24
  Type: Initial release