Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2B SuperfamilyCore histone-like8042439 3001387 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyCore histone-like8042439 3001387 SCOP2B (2022-06-29)
A [auth M]SCOP2B SuperfamilyCore histone-like8070521 3001387 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyCore histone-like8070521 3001387 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyCore histone-like8041278 3001387 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyCore histone-like8041278 3001387 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyCore histone-like8041279 3001387 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyCore histone-like8041279 3001387 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BPF15511e7crrB1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF15511ECOD (1.6)
FPF15511e7crrF1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF15511ECOD (1.6)
K [auth I]PF00856e7crrI1 A: beta barrelsX: beta-clipH: SET domain-like (From Topology)T: SET domain-likeF: PF00856ECOD (1.6)
K [auth I]PF17907e7crrI2 A: few secondary structure elementsX: Zn3Cys9 preSET domain-related (From Topology)H: Zn3Cys9 preSET domain-related (From Topology)T: Zn3Cys9 preSET domain-relatedF: PF17907ECOD (1.6)
A [auth M]PF00125e7crrM1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125ECOD (1.6)
EPF00125e7crrE1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125ECOD (1.6)
GPF00125,PF16211e7crrG1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125,PF16211ECOD (1.6)
CPF00125,PF16211e7crrC1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125,PF16211ECOD (1.6)
DPF00125e7crrD1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125ECOD (1.6)
HPF00125e7crrH1 A: alpha arraysX: Histone-likeH: Histone-relatedT: HistoneF: PF00125ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B, F
PF15511Centromere kinetochore component CENP-T histone fold (CENP-T_C)Centromere kinetochore component CENP-T histone foldCENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly asso ...CENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly associate with CENP-A, but with histone H3 in the centromere region. CENP-T and -W form a hetero-tetramer with CENP-S and -X and bind to a ~100 bp region of nucleosome-free DNA forming a nucleosome-like structure. The DNA-CENP-T-W-S-X complex is likely to be associated with histone H3-containing nucleosomes rather than with CENP-nucleosomes. This domain is the C-terminal histone fold domain of CENP-T, which associates with chromatin [2-3].
Domain
K [auth I]PF00856SET domain (SET)SET domain- Family
K [auth I]PF17907AWS domain (AWS)AWS domainThis entry represents the AWS (associated with SET domain) domain [1]. This is a zinc binding domain. The full AWS domain contains 8 cysteines. This entry represents the N-terminal part of the domain, with the C-terminal part interwoven with the SET ...This entry represents the AWS (associated with SET domain) domain [1]. This is a zinc binding domain. The full AWS domain contains 8 cysteines. This entry represents the N-terminal part of the domain, with the C-terminal part interwoven with the SET domain.
Domain
A [auth M],
E
PF00125Core histone H2A/H2B/H3/H4 (Histone)Core histone H2A/H2B/H3/H4- Domain
C, G
PF16211C-terminus of histone H2A (Histone_H2A_C)C-terminus of histone H2A- Family
C, G
PF00125Core histone H2A/H2B/H3/H4 (Histone)Core histone H2A/H2B/H3/H4- Domain
D, H
PF00125Core histone H2A/H2B/H3/H4 (Histone)Core histone H2A/H2B/H3/H4- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
B, F
Histone H4 -
I [auth A]DNA (168-MER)---
K [auth I]Histone-lysine N-methyltransferase NSD3
A [auth M],
E
Histone H3 -
C, G
Histone H2A -
D, H
Histone H2B -
J [auth K]DNA(168-MER)---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
B, F
IPR009072Histone-foldHomologous Superfamily
B, F
IPR001951Histone H4Family
B, F
IPR035425CENP-T/Histone H4, histone foldDomain
B, F
IPR019809Histone H4, conserved siteConserved Site
B, F
IPR004823TATA box binding protein associated factor (TAF), histone-like fold domainDomain
K [auth I]IPR006560AWS domainDomain
K [auth I]IPR047453Histone-lysine N-methyltransferase NSD3, second PWWP domainDomain
K [auth I]IPR001965Zinc finger, PHD-typeDomain
K [auth I]IPR046341SET domain superfamilyHomologous Superfamily
K [auth I]IPR001214SET domainDomain
K [auth I]IPR000313PWWP domainDomain
K [auth I]IPR041306NSD, Cys-His rich domainDomain
K [auth I]IPR047527Histone-lysine N-methyltransferase NSD3, fifth PHD fingerDomain
K [auth I]IPR019787Zinc finger, PHD-fingerDomain
K [auth I]IPR011011Zinc finger, FYVE/PHD-typeHomologous Superfamily
K [auth I]IPR003616Post-SET domainDomain
K [auth I]IPR019786Zinc finger, PHD-type, conserved siteConserved Site
K [auth I]IPR047461Histone-lysine N-methyltransferase NSD3, SET domainDomain
K [auth I]IPR013083Zinc finger, RING/FYVE/PHD-typeHomologous Superfamily
K [auth I]IPR047456Histone-lysine N-methyltransferase NSD3, second PHD fingerDomain
K [auth I]IPR047451Histone-lysine N-methyltransferase NSD3, first PWWP domainDomain
K [auth I]IPR047458Histone-lysine N-methyltransferase NSD3, fourth PHD fingerDomain
A [auth M],
E
IPR009072Histone-foldHomologous Superfamily
A [auth M],
E
IPR007125Histone H2A/H2B/H3Domain
A [auth M],
E
IPR000164Histone H3/CENP-AFamily
C, G
IPR009072Histone-foldHomologous Superfamily
C, G
IPR007125Histone H2A/H2B/H3Domain
C, G
IPR002119Histone H2AFamily
C, G
IPR032454Histone H2A, C-terminal domainDomain
C, G
IPR032458Histone H2A conserved siteConserved Site
D, H
IPR009072Histone-foldHomologous Superfamily
D, H
IPR007125Histone H2A/H2B/H3Domain
D, H
IPR000558Histone H2BFamily