RCSB Protein Data Bank

Negamycin Binds to the Wall of the Nascent Chain Exit Tunnel of the 50S Ribosomal Subunit

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RCSB PDB Mol* Viewer 2.11.2 [1/27/2025, 4:56:27 PM]

Sequence of

GUUGGCUACU11 AUGCCAGCUG21 GUGGAUUGCU31 CGGCUCAGGC41 GCUGAUGAAG51 GACGUGCCAA61 GCUGCGAUAA71 GCCAUGGGGA81 GCCGCACGGA91 GGCGAAGAAC101 CAUGGAUUUC111 CGAAUGAGAA121 UCUCUAACAA133 UUGCUUCGCG143 CAAUGAGGAA153 CCCCGAGAAC163 UGAAACAUCU173 CAGUAUCGGG183 AGGAACAGAA193 AACGCAAUGU203 GAUGUCGUUA213 GUAACCGCGA223 GUGAACGCGA233 UACAGCCCAA243 ACCGAAGCCC253 UCACGGGCAA263 UGUGGUGUCA273 GGGCUACCUC283 UCAUCAGCCG293 ACCGUCUCGA303 CGAAGUCUCU313 UGGAACAGAG323 CGUGAUACAG333 GGUGACAACC343 CCGUACUCGA353 GACCAGUACG363 ACGUGCGGUA373 GUGCCAGAGU383 AGCGGGGGUU393 GGAUAUCCCU403 CGCGAAUAAC413 GCAGGCAUCG423 ACUGCGAAGG433 CUAAACACAA443 CCUGAGACCG453 AUAGUGAACA463 AGUAGUGUGA473 ACGAACGCUG483 CAAAGUACCC493 UCAGAAGGGA503 GGCGAAAUAG513 AGCAUGAAAU523 CAGUUGGCGA533 UCGAGCGACA543 GGGCAUACAA553 GGUCCCUCGA563 CGAAUGACCG573 ACGCGCGAGC583 GUCCAGUAAG593 ACUCACGGGA603 AGCCGAUGUU613 CUGUCGUACG623 UUUUG1MAAAAA633 CGAGCCAGGG643 AGUGUGUCUG653 CAUGGCAAGU663 CUAACCGGAG673 UAUCCGGGGA683 GGCACAGGGA693 AACCGACAUG703 GCCGCAGGGC713 UUGCCCGAGG724 GCCGCCGUCU734 UCAAGGGCGG744 GGAGCCAUGU754 GGACACGACC764 CGAAUCCGGA774 CGAUCUACGC784 AUGGACAAGA794 UGAAGCGUGC804 CGAAAGGCAC814 GUGGAAGUCU824 GUUAGAGUUG834 GUGUCCUACA844 AUACCCUCUC854 GUGAUCUAUG864 UGUAGGGGUG874 AAAGGCCCAU884 CGAGUCCGGC894 AACAGCUGGU904 UCCAAUCGAA914 ACAUGUCGAA924 GCAUGACCUC934 CGCCGAGGUA944 GUCUGUGAGG954 UAGAGCGACC964 GAUUGGUCCU1002 GUCAAACUCC1012 AAACUUACAG1022 ACGCCGUUUG1032 ACGCGGGGAU1042 UCCGGUGCGC1052 GGGGUAAGCC1062 UGUGUACCAG1072 GAGGGGAACA1082 ACCCAGAGAU1092 AGGUUAAGGU1102 CCCCAAGUGU1112 GGAUUAAGUG1122 UAAUCCUCUG1132 AAGGUGGUCU1142 CGAGCCCUAG1152 ACAGCCGGGA1162 GGUGAGCUUA1172 GAAGCAGCUA1182 CCCUCUAAGA1192 AAAGCGUAAC1202 AGCUUACCGG1212 CCGAGGUUUG1222 AGGCGCCCAA1232 AAUGAUCGGG1242 ACUCAAAUCC1252 ACCACCGAGA1262 CCUGUCCGUA1272 CCACUCAUAC1282 UGGUAAUCGA1292 GUAGAUUGGC1302 GCUCUAAUUG1312 GAUGGAAGUA1322 GGGGUGAAAA1332 CUCCUAUGGA1342 CCGAUUAGUG1352 ACGAAAAUCC1362 UGGCCAUAGU1372 AGCAGCGAUA1382 GUCGGGUGAG1392 AACCCCGACG1402 GCCUAAUGGA1412 UAAGGGUUCC1422 UCAGCACUGC1432 UGAUCAGCUG1442 AGGGUUAGCC1452 GGUCCUAAGU1462 CAUACCGCAA1472 CUCGACUAUG1482 ACGAAAUGGG1492 AAACGGGUUA1502 AUAUUCCCGU1512 GCCACUAUGC1522 AGUGAAAGUU1532 GACGCCCUGG1542 GGUCGAUCAC1552 GCUGGGCAUC1563 GCCCAGUCGA1573 ACCGUCCAAC1583 UCCGUGGAAG1593 CCGUAAUGGC1603 AGGAAGCGGA1613 CGAACGGCGG1623 CAUAGGGAAA1633 CGUGAUUCAA1643 CCUGGGGCCC1653 AUGAAAAGAC1663 GAGCAUAGUG1673 UCCGUACCGA1683 GAACCGACAC1693 AGGUGUCCAU1703 GGCGGCGAAA1713 GCCAAGGCCU1723 GUCGGGAGCA1733 ACCAACGUUA1743 GGGAAUUCGG1753 CAAGUUAGUC1763 CCGUACCUUC1773 GGAAGAAGGG1783 AUGCCUGCUC1793 CGGAACGGAG1803 CAGGUCGCAG1813 UGACUCGGAA1823 GCUCGGACUG1833 UCUAGUAACA1843 ACAUAGGUGA1853 CCGCAAAUCC1863 GCAAGGACUC1873 GUACGGUCAC1883 UGAAUCCUGC1893 CCAGUGCAGG1903 UAUCUGAACA1913 CCUCGUACAA1923 GAGGACGAAG1933 GACCUGUCAA1943 CGGCGGGGGU1965 CUUAAGGUAG1975 CGUAGUACCU1985 UGCCGCAUCA1995 GUAGCGGCUU2005 GCAUGAAUGG2015 AUUAACCAGA2025 GCUUCACUGU2035 CCCAACGUUG2045 GGCCCGGUGA2055 ACUGUACAUU2065 CCAGUGCGGA2075 GUCUGGAGAC2085 ACCCAGGGGG2095 AAGCGAAGAC2105 CCUAUGGAGC2115 UUUACUGCAG2125 GCUGUCGCUG2135 AGGACUCUCA2245 CUCCGGGAGG2255 AGGACACCGA2265 UAGCCGGGCA2275 GUUUGACUGG2285 GGCGGUACGC2295 GCUCGAAAAG2305 AUAUCGAGCG2315 CGCCCUAUGG2325 CUAUCUCAGC2335 CGGGGACCCG2350 GCGAAGAGUG2360 CAAGAGCAAA2370 AGAUAGCUUG2380 ACAGUGUUCU2390 UCCCAACGAG2400 GAACGCUGAC2410 GCGAAAGCGU2420 GGUCUAGCGA2430 ACCAAUUAGC2440 CUGCUUGAUG2450 CGGGCAAUUG2460 AUGACAGAAA2470 AGCUACCCUA2480 GGGAUAACAG2490 AGUCGUCACU2500 CGCAAGAGCA2510 CAUAUCGACC2520 GAGUGGCUUG2530 CUACCUCGAU2540 GUCGGUUCCC2550 UCCAUCCUGC2560 CCGUGCAGAA2570 GCGGGCAAGG2580 GUGAGGUOMUOMGU2590 UCGCCUAUUA2600 AAGGAGGUCG2610 UGAGCUGGGUR32620 UPSUAGACCGUC2630 GUGAGACAGG2640 UCGGCUGCUA2650 UCUACUGGGU2660 GUGUAGGUGU2672 CUGACAAGAA2682 CGACCGUAUA2692 GUACGAGAGG2702 AACUACGGUU2712 GGUGGCCACU2722 GGUGUACCGG2732 UUGUUCGAGA2742 GAGCACGUGC2752 CGGGUAGCCA2762 CGCCACACGG2772 GGUAAGAGCU2782 GAACGCAUCU2792 AAGCUCGAAA2802 CCCACUUGGA2812 AAAGAGACAC2822 CGCCGAGGUC2832 CCGCGUACAA2842 GACGCGGUCG2852 AUAGACUCGG2862 GGUGUGCGCG2872 UCGAGGUAAC2882 GAGACGUUAA2892 GCCCACGAGC2902 ACUAACAGAC2912 CAAAGCCAUC AU

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

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2QEX

Negamycin Binds to the Wall of the Nascent Chain Exit Tunnel of the 50S Ribosomal Subunit

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