Annotations: 11JD

RNA Vault Shoulder with ADPR bound, extended conformation, focused refinement (MVP/PARP4/TEP1 NADP sample)

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C	PF17795	Major Vault Protein Repeat domain (Vault_3)	Major Vault Protein Repeat domain	This domain is found in the Major Vault Protein.	Domain
A, B, C	PF17796	Major Vault Protein repeat domain (Vault_4)	Major Vault Protein repeat domain		Domain
A, B, C	PF11978	Shoulder domain (MVP_shoulder)	Shoulder domain	This domain is found in the Major Vault Protein and has been called the shoulder domain [1]. This family includes two bacterial proteins Swiss:A6FXE2 and Swiss:A1ZGE7. This suggests that some bacteria may possess vault particles.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C	Major vault protein	protein phosphatase binding phosphatase binding protein binding binding enzyme binding kinase binding protein kinase binding identical protein binding	RNA transport nitrogen compound transport transport nucleic acid transport mRNA transport establishment of localization localization establishment of RNA localization macromolecule localization RNA localization nucleobase-containing compound transport establishment of protein localization protein transport intracellular protein localization RNA transport nitrogen compound transport transport nucleic acid transport mRNA transport establishment of localization localization establishment of RNA localization macromolecule localization RNA localization nucleobase-containing compound transport establishment of protein localization protein transport intracellular protein localization cell population proliferation cellular process cellular response to stimulus regulation of cellular process response to stimulus signaling negative regulation of signaling negative regulation of ERBB signaling pathway negative regulation of biological process regulation of signal transduction cell surface receptor protein tyrosine kinase signaling pathway negative regulation of cell communication cell communication regulation of epidermal growth factor receptor signaling pathway negative regulation of cellular process epidermal growth factor receptor signaling pathway signal transduction enzyme-linked receptor protein signaling pathway regulation of biological process regulation of signaling regulation of ERBB signaling pathway cell surface receptor signaling pathway negative regulation of response to stimulus biological regulation negative regulation of signal transduction regulation of response to stimulus negative regulation of epidermal growth factor receptor signaling pathway ERBB signaling pathway regulation of cell communication intracellular signal transduction protein activation cascade biosynthetic process metabolic process primary metabolic process protein metabolic process macromolecule metabolic process gene expression macromolecule biosynthetic process protein maturation	cellular anatomical structure membrane extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle vesicle extracellular membrane-bounded organelle intracellular anatomical structure cytoplasm cytosol protein-containing complex cellular anatomical structure membrane extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle vesicle extracellular membrane-bounded organelle intracellular anatomical structure cytoplasm cytosol protein-containing complex nucleus nuclear protein-containing complex intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle envelope nuclear envelope nuclear pore membrane-enclosed lumen intracellular vesicle ficolin-1-rich granule intracellular organelle lumen organelle lumen cytoplasmic vesicle ficolin-1-rich granule lumen secretory granule secretory vesicle cytoskeleton membraneless organelle intracellular membraneless organelle vesicle lumen cytoplasmic vesicle lumen secretory granule lumen perinuclear region of cytoplasm ribonucleoprotein complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR041136	Major vault protein repeat domain 4	Domain
A, B, C	IPR036013	Band 7/SPFH domain superfamily	Homologous Superfamily
A, B, C	IPR041139	Major vault protein repeat domain	Domain
A, B, C	IPR043023	Major vault protein repeat domain superfamily	Homologous Superfamily
A, B, C	IPR043179	Major vault protein repeat domain 2 superfamily	Homologous Superfamily
A, B, C	IPR040989	Major vault protein repeat domain 3	Domain
A, B, C	IPR039059	Major vault protein	Family
A, B, C	IPR002499	Major vault protein, N-terminal	Repeat
A, B, C	IPR021870	Major vault protein, shoulder domain	Domain
A, B, C	IPR041134	Major vault protein repeat domain 2	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C	: Q14764	Liver Cirrhosis, Experimental autism spectrum disorder juvenile dermatomyositis malignant mesothelioma osteoarthritis susceptibility 1 pancreatic ductal adenocarcinoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia subependymal giant cell astrocytoma dental caries myopathy pancreatic intraductal papillary-mucinous carcinoma pilocytic astrocytoma tuberculosis glioblastoma malignant ependymoma Liver Cirrhosis, Experimental autism spectrum disorder juvenile dermatomyositis malignant mesothelioma osteoarthritis susceptibility 1 pancreatic ductal adenocarcinoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia subependymal giant cell astrocytoma dental caries myopathy pancreatic intraductal papillary-mucinous carcinoma pilocytic astrocytoma tuberculosis glioblastoma malignant ependymoma osteoarthritis ovarian cancer pancreatic intraductal papillary-mucinous neoplasm psoriasis

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

11JD | pdb_000011jd

RNA Vault Shoulder with ADPR bound, extended conformation, focused refinement (MVP/PARP4/TEP1 NADP sample)

External Resource: Annotation

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage

Pharos: Disease Associations Pharos Homepage Annotation