12EQ | pdb_000012eq

Subtomogram average structure of flagellar export apparatus and MS-ring in Borrelia burgdorferi

External Resource: Annotation

Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
GD [auth Aw], HD [auth Ax], ID [auth Ay], JD [auth Az], KD [auth A1], GD [auth Aw], HD [auth Ax], ID [auth Ay], JD [auth Az], KD [auth A1], LD [auth A2], MD [auth A3], ND [auth A4], OD [auth A5]	Flagellar biosynthesis protein FlhA	-	organelle assembly cell projection organization bacterial-type flagellum assembly membraneless organelle assembly cellular component biogenesis cellular component organization bacterial-type flagellum organization organelle organization cellular component assembly cellular process cellular component organization or biogenesis cell projection assembly establishment of protein localization transport organelle assembly cell projection organization bacterial-type flagellum assembly membraneless organelle assembly cellular component biogenesis cellular component organization bacterial-type flagellum organization organelle organization cellular component assembly cellular process cellular component organization or biogenesis cell projection assembly establishment of protein localization transport secretion establishment of protein localization to extracellular region export from cell protein secretion establishment of localization protein localization to extracellular region localization secretion by cell protein transport macromolecule localization intracellular protein localization	cell periphery cellular anatomical structure plasma membrane membrane
CD [auth Av], DD [auth AU], ED [auth AV], FD [auth AW]	Flagellar biosynthetic protein FliQ	-	organelle assembly cell projection organization bacterial-type flagellum assembly membraneless organelle assembly cellular component biogenesis cellular component organization bacterial-type flagellum organization organelle organization cellular component assembly cellular process cellular component organization or biogenesis cell projection assembly establishment of protein localization transport organelle assembly cell projection organization bacterial-type flagellum assembly membraneless organelle assembly cellular component biogenesis cellular component organization bacterial-type flagellum organization organelle organization cellular component assembly cellular process cellular component organization or biogenesis cell projection assembly establishment of protein localization transport secretion establishment of protein localization to extracellular region export from cell protein secretion establishment of localization protein localization to extracellular region localization secretion by cell protein transport macromolecule localization intracellular protein localization	cell periphery cellular anatomical structure plasma membrane membrane bacterial-type flagellum basal body cell projection organelle membraneless organelle bacterial-type flagellum
AD [auth At], BD [auth Au], WC [auth Ap], XC [auth Aq], YC [auth Ar], AD [auth At], BD [auth Au], WC [auth Ap], XC [auth Aq], YC [auth Ar], ZC [auth As]	Flagellar basal-body rod protein FlgC	-	bacterial-type flagellum-dependent swarming motility bacterial-type flagellum-dependent cell motility cellular process cell motility archaeal or bacterial-type flagellum-dependent cell motility cilium or flagellum-dependent cell motility	bacterial-type flagellum basal body cell projection cellular anatomical structure organelle membraneless organelle bacterial-type flagellum basal body, rod bacterial-type flagellum
RC [auth Ak], SC [auth Al], TC [auth Am], UC [auth An], VC [auth Ao]	Flagellar basal body rod protein FlgB	-	bacterial-type flagellum-dependent swarming motility bacterial-type flagellum-dependent cell motility cellular process cell motility archaeal or bacterial-type flagellum-dependent cell motility cilium or flagellum-dependent cell motility	bacterial-type flagellum basal body cell projection cellular anatomical structure organelle membraneless organelle bacterial-type flagellum basal body, rod bacterial-type flagellum
LC [auth Ae], MC [auth Af], NC [auth Ag], OC [auth Ah], PC [auth Ai], LC [auth Ae], MC [auth Af], NC [auth Ag], OC [auth Ah], PC [auth Ai], QC [auth Aj]	Flagellar hook-basal body complex protein FliE	cytoskeletal motor activity structural molecule activity	bacterial-type flagellum-dependent cell motility cellular process cell motility archaeal or bacterial-type flagellum-dependent cell motility cilium or flagellum-dependent cell motility	bacterial-type flagellum basal body cell projection cellular anatomical structure organelle membraneless organelle bacterial-type flagellum
KC [auth Ad]	Flagellar biosynthetic protein FliR	-	organelle assembly cell projection organization bacterial-type flagellum assembly membraneless organelle assembly cellular component biogenesis cellular component organization bacterial-type flagellum organization organelle organization cellular component assembly cellular process cellular component organization or biogenesis cell projection assembly localization establishment of protein localization organelle assembly cell projection organization bacterial-type flagellum assembly membraneless organelle assembly cellular component biogenesis cellular component organization bacterial-type flagellum organization organelle organization cellular component assembly cellular process cellular component organization or biogenesis cell projection assembly localization establishment of protein localization protein targeting establishment of localization	cell periphery cellular anatomical structure plasma membrane membrane bacterial-type flagellum basal body cell projection organelle membraneless organelle bacterial-type flagellum
FC [auth AY], GC [auth AZ], HC [auth Aa], IC [auth Ab], JC [auth Ac]	Flagellar biosynthetic protein FliP	-	cellular component organization bacterial-type flagellum organization organelle organization cell projection organization cellular process cellular component organization or biogenesis establishment of protein localization transport secretion establishment of protein localization to extracellular region export from cell protein secretion establishment of localization protein localization to extracellular region cellular component organization bacterial-type flagellum organization organelle organization cell projection organization cellular process cellular component organization or biogenesis establishment of protein localization transport secretion establishment of protein localization to extracellular region export from cell protein secretion establishment of localization protein localization to extracellular region localization secretion by cell protein transport macromolecule localization intracellular protein localization	cell periphery cellular anatomical structure plasma membrane membrane bacterial-type flagellum basal body cell projection organelle membraneless organelle bacterial-type flagellum
EC [auth AX]	Flagellar biosynthetic protein FlhB	-	organelle assembly cell projection organization bacterial-type flagellum assembly membraneless organelle assembly cellular component biogenesis cellular component organization bacterial-type flagellum organization organelle organization cellular component assembly cellular process cellular component organization or biogenesis cell projection assembly establishment of protein localization transport organelle assembly cell projection organization bacterial-type flagellum assembly membraneless organelle assembly cellular component biogenesis cellular component organization bacterial-type flagellum organization organelle organization cellular component assembly cellular process cellular component organization or biogenesis cell projection assembly establishment of protein localization transport secretion establishment of protein localization to extracellular region export from cell protein secretion establishment of localization protein localization to extracellular region localization secretion by cell protein transport macromolecule localization intracellular protein localization	cell periphery cellular anatomical structure plasma membrane membrane
A, AA [auth a], AB [auth 1], AC [auth AQ], B, A, AA [auth a], AB [auth 1], AC [auth AQ], B, BA [auth b], BB [auth 2], BC [auth AR], C, CA [auth c], CB [auth 3], CC [auth AS], D, DA [auth d], DB [auth 4], DC [auth AT], E, EA [auth e], EB [auth 5], F, FA [auth f], FB [auth 6], G, GA [auth g], GB [auth 7], H, HA [auth h], HB [auth 8], I, IA [auth i], IB [auth 9], J, JA [auth j], JB [auth 0], K, KA [auth k], KB [auth AA], L, LA [auth l], LB [auth AB], M, MA [auth m], MB [auth AC], N, NA [auth n], NB [auth AD], O, OA [auth o], OB [auth AE], P, PA [auth p], PB [auth AF], Q, QA [auth q], QB [auth AG], R, RA [auth r], RB [auth AH], S, SA [auth s], SB [auth AI], T, TA [auth t], TB [auth AJ], U, UA [auth u], UB [auth AK], V, VA [auth v], VB [auth AL], W, WA [auth w], WB [auth AM], X, XA [auth x], XB [auth AN], Y, YA [auth y], YB [auth AO], Z, ZA [auth z], ZB [auth AP]	Flagellar M-ring protein	cytoskeletal motor activity	bacterial-type flagellum-dependent cell motility cellular process cell motility archaeal or bacterial-type flagellum-dependent cell motility cilium or flagellum-dependent cell motility	cell periphery cellular anatomical structure plasma membrane membrane bacterial-type flagellum basal body cell projection bacterial-type flagellum basal body, MS ring organelle membraneless organelle bacterial-type flagellum

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
GD [auth Aw], HD [auth Ax], ID [auth Ay], JD [auth Az], KD [auth A1], GD [auth Aw], HD [auth Ax], ID [auth Ay], JD [auth Az], KD [auth A1], LD [auth A2], MD [auth A3], ND [auth A4], OD [auth A5]	IPR042194	FHIPEP, domain 1	Homologous Superfamily
GD [auth Aw], HD [auth Ax], ID [auth Ay], JD [auth Az], KD [auth A1], GD [auth Aw], HD [auth Ax], ID [auth Ay], JD [auth Az], KD [auth A1], LD [auth A2], MD [auth A3], ND [auth A4], OD [auth A5]	IPR042196	FHIPEP, domain 4	Homologous Superfamily
GD [auth Aw], HD [auth Ax], ID [auth Ay], JD [auth Az], KD [auth A1], GD [auth Aw], HD [auth Ax], ID [auth Ay], JD [auth Az], KD [auth A1], LD [auth A2], MD [auth A3], ND [auth A4], OD [auth A5]	IPR006301	Flagellar biosynthesis protein FlhA	Family
GD [auth Aw], HD [auth Ax], ID [auth Ay], JD [auth Az], KD [auth A1], GD [auth Aw], HD [auth Ax], ID [auth Ay], JD [auth Az], KD [auth A1], LD [auth A2], MD [auth A3], ND [auth A4], OD [auth A5]	IPR001712	Type III secretion system FHIPEP	Family
GD [auth Aw], HD [auth Ax], ID [auth Ay], JD [auth Az], KD [auth A1], GD [auth Aw], HD [auth Ax], ID [auth Ay], JD [auth Az], KD [auth A1], LD [auth A2], MD [auth A3], ND [auth A4], OD [auth A5]	IPR042193	FHIPEP, domain 3	Homologous Superfamily
GD [auth Aw], HD [auth Ax], ID [auth Ay], JD [auth Az], KD [auth A1], GD [auth Aw], HD [auth Ax], ID [auth Ay], JD [auth Az], KD [auth A1], LD [auth A2], MD [auth A3], ND [auth A4], OD [auth A5]	IPR025505	FHIPEP conserved site	Conserved Site
CD [auth Av], DD [auth AU], ED [auth AV], FD [auth AW]	IPR006305	Flagellar biosynthesis protein FliQ	Family
CD [auth Av], DD [auth AU], ED [auth AV], FD [auth AW]	IPR002191	Bacterial export protein family 3	Family
AD [auth At], BD [auth Au], WC [auth Ap], XC [auth Aq], YC [auth Ar], AD [auth At], BD [auth Au], WC [auth Ap], XC [auth Aq], YC [auth Ar], ZC [auth As]	IPR019776	Flagellar basal body rod protein, conserved site	Conserved Site
AD [auth At], BD [auth Au], WC [auth Ap], XC [auth Aq], YC [auth Ar], AD [auth At], BD [auth Au], WC [auth Ap], XC [auth Aq], YC [auth Ar], ZC [auth As]	IPR006299	Flagellar basal-body rod protein FlgC	Family
AD [auth At], BD [auth Au], WC [auth Ap], XC [auth Aq], YC [auth Ar], AD [auth At], BD [auth Au], WC [auth Ap], XC [auth Aq], YC [auth Ar], ZC [auth As]	IPR010930	Flagellar basal-body/hook protein, C-terminal domain	Domain
AD [auth At], BD [auth Au], WC [auth Ap], XC [auth Aq], YC [auth Ar], AD [auth At], BD [auth Au], WC [auth Ap], XC [auth Aq], YC [auth Ar], ZC [auth As]	IPR001444	Flagellar basal body rod protein, N-terminal	Domain
RC [auth Ak], SC [auth Al], TC [auth Am], UC [auth An], VC [auth Ao]	IPR019776	Flagellar basal body rod protein, conserved site	Conserved Site
RC [auth Ak], SC [auth Al], TC [auth Am], UC [auth An], VC [auth Ao]	IPR001444	Flagellar basal body rod protein, N-terminal	Domain
RC [auth Ak], SC [auth Al], TC [auth Am], UC [auth An], VC [auth Ao]	IPR006300	Flagellar basal-body rod protein FlgB	Family
LC [auth Ae], MC [auth Af], NC [auth Ag], OC [auth Ah], PC [auth Ai], LC [auth Ae], MC [auth Af], NC [auth Ag], OC [auth Ah], PC [auth Ai], QC [auth Aj]	IPR001624	Flagellar hook-basal body complex protein FliE	Family
KC [auth Ad]	IPR002010	Type III secretion system inner membrane R protein	Family
KC [auth Ad]	IPR006303	Flagellar biosynthesis protein FliR	Family
FC [auth AY], GC [auth AZ], HC [auth Aa], IC [auth Ab], JC [auth Ac]	IPR005838	Type III secretion system inner membrane P protein	Family
FC [auth AY], GC [auth AZ], HC [auth Aa], IC [auth Ab], JC [auth Ac]	IPR005837	Flagellar transport protein FliP	Family
EC [auth AX]	IPR006136	Flagellar biosynthetic protein FlhB	Family
EC [auth AX]	IPR006135	Type III secretion system substrate exporter	Family
EC [auth AX]	IPR029025	Type III secretion system substrate exporter, C-terminal	Homologous Superfamily
A, AA [auth a], AB [auth 1], AC [auth AQ], B, A, AA [auth a], AB [auth 1], AC [auth AQ], B, BA [auth b], BB [auth 2], BC [auth AR], C, CA [auth c], CB [auth 3], CC [auth AS], D, DA [auth d], DB [auth 4], DC [auth AT], E, EA [auth e], EB [auth 5], F, FA [auth f], FB [auth 6], G, GA [auth g], GB [auth 7], H, HA [auth h], HB [auth 8], I, IA [auth i], IB [auth 9], J, JA [auth j], JB [auth 0], K, KA [auth k], KB [auth AA], L, LA [auth l], LB [auth AB], M, MA [auth m], MB [auth AC], N, NA [auth n], NB [auth AD], O, OA [auth o], OB [auth AE], P, PA [auth p], PB [auth AF], Q, QA [auth q], QB [auth AG], R, RA [auth r], RB [auth AH], S, SA [auth s], SB [auth AI], T, TA [auth t], TB [auth AJ], U, UA [auth u], UB [auth AK], V, VA [auth v], VB [auth AL], W, WA [auth w], WB [auth AM], X, XA [auth x], XB [auth AN], Y, YA [auth y], YB [auth AO], Z, ZA [auth z], ZB [auth AP]	IPR006182	Flagellar M-ring, N-terminal	Domain
A, AA [auth a], AB [auth 1], AC [auth AQ], B, A, AA [auth a], AB [auth 1], AC [auth AQ], B, BA [auth b], BB [auth 2], BC [auth AR], C, CA [auth c], CB [auth 3], CC [auth AS], D, DA [auth d], DB [auth 4], DC [auth AT], E, EA [auth e], EB [auth 5], F, FA [auth f], FB [auth 6], G, GA [auth g], GB [auth 7], H, HA [auth h], HB [auth 8], I, IA [auth i], IB [auth 9], J, JA [auth j], JB [auth 0], K, KA [auth k], KB [auth AA], L, LA [auth l], LB [auth AB], M, MA [auth m], MB [auth AC], N, NA [auth n], NB [auth AD], O, OA [auth o], OB [auth AE], P, PA [auth p], PB [auth AF], Q, QA [auth q], QB [auth AG], R, RA [auth r], RB [auth AH], S, SA [auth s], SB [auth AI], T, TA [auth t], TB [auth AJ], U, UA [auth u], UB [auth AK], V, VA [auth v], VB [auth AL], W, WA [auth w], WB [auth AM], X, XA [auth x], XB [auth AN], Y, YA [auth y], YB [auth AO], Z, ZA [auth z], ZB [auth AP]	IPR045851	AMP-binding enzyme domain superfamily	Homologous Superfamily
A, AA [auth a], AB [auth 1], AC [auth AQ], B, A, AA [auth a], AB [auth 1], AC [auth AQ], B, BA [auth b], BB [auth 2], BC [auth AR], C, CA [auth c], CB [auth 3], CC [auth AS], D, DA [auth d], DB [auth 4], DC [auth AT], E, EA [auth e], EB [auth 5], F, FA [auth f], FB [auth 6], G, GA [auth g], GB [auth 7], H, HA [auth h], HB [auth 8], I, IA [auth i], IB [auth 9], J, JA [auth j], JB [auth 0], K, KA [auth k], KB [auth AA], L, LA [auth l], LB [auth AB], M, MA [auth m], MB [auth AC], N, NA [auth n], NB [auth AD], O, OA [auth o], OB [auth AE], P, PA [auth p], PB [auth AF], Q, QA [auth q], QB [auth AG], R, RA [auth r], RB [auth AH], S, SA [auth s], SB [auth AI], T, TA [auth t], TB [auth AJ], U, UA [auth u], UB [auth AK], V, VA [auth v], VB [auth AL], W, WA [auth w], WB [auth AM], X, XA [auth x], XB [auth AN], Y, YA [auth y], YB [auth AO], Z, ZA [auth z], ZB [auth AP]	IPR013556	Flagellar M-ring C-terminal	Domain
A, AA [auth a], AB [auth 1], AC [auth AQ], B, A, AA [auth a], AB [auth 1], AC [auth AQ], B, BA [auth b], BB [auth 2], BC [auth AR], C, CA [auth c], CB [auth 3], CC [auth AS], D, DA [auth d], DB [auth 4], DC [auth AT], E, EA [auth e], EB [auth 5], F, FA [auth f], FB [auth 6], G, GA [auth g], GB [auth 7], H, HA [auth h], HB [auth 8], I, IA [auth i], IB [auth 9], J, JA [auth j], JB [auth 0], K, KA [auth k], KB [auth AA], L, LA [auth l], LB [auth AB], M, MA [auth m], MB [auth AC], N, NA [auth n], NB [auth AD], O, OA [auth o], OB [auth AE], P, PA [auth p], PB [auth AF], Q, QA [auth q], QB [auth AG], R, RA [auth r], RB [auth AH], S, SA [auth s], SB [auth AI], T, TA [auth t], TB [auth AJ], U, UA [auth u], UB [auth AK], V, VA [auth v], VB [auth AL], W, WA [auth w], WB [auth AM], X, XA [auth x], XB [auth AN], Y, YA [auth y], YB [auth AO], Z, ZA [auth z], ZB [auth AP]	IPR043427	Lipoprotein YscJ/Flagellar M-ring protein	Family
A, AA [auth a], AB [auth 1], AC [auth AQ], B, A, AA [auth a], AB [auth 1], AC [auth AQ], B, BA [auth b], BB [auth 2], BC [auth AR], C, CA [auth c], CB [auth 3], CC [auth AS], D, DA [auth d], DB [auth 4], DC [auth AT], E, EA [auth e], EB [auth 5], F, FA [auth f], FB [auth 6], G, GA [auth g], GB [auth 7], H, HA [auth h], HB [auth 8], I, IA [auth i], IB [auth 9], J, JA [auth j], JB [auth 0], K, KA [auth k], KB [auth AA], L, LA [auth l], LB [auth AB], M, MA [auth m], MB [auth AC], N, NA [auth n], NB [auth AD], O, OA [auth o], OB [auth AE], P, PA [auth p], PB [auth AF], Q, QA [auth q], QB [auth AG], R, RA [auth r], RB [auth AH], S, SA [auth s], SB [auth AI], T, TA [auth t], TB [auth AJ], U, UA [auth u], UB [auth AK], V, VA [auth v], VB [auth AL], W, WA [auth w], WB [auth AM], X, XA [auth x], XB [auth AN], Y, YA [auth y], YB [auth AO], Z, ZA [auth z], ZB [auth AP]	IPR000067	Flagellar M-ring protein FliF	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.