1CK7 | pdb_00001ck7

GELATINASE A (FULL-LENGTH)

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Membrane Protein Annotation: OPM

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1ck7a6	All alpha proteins	PGBD-like	PGBD-like	MMP N-terminal domain	Gelatinase A (MMP-2)	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d1ck7a1	All beta proteins	4-bladed beta-propeller	Hemopexin-like domain	Hemopexin-like domain	Gelatinase A (MMP-2), C-terminal domain	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d1ck7a7	Alpha and beta proteins (a+b)	Zincin-like	Metalloproteases ('zincins'), catalytic domain	Matrix metalloproteases, catalytic domain	Gelatinase A	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d1ck7a3	Small proteins	Kringle-like	Kringle-like	Fibronectin type II module	Gelatinase A (MMP-2) type II modules	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Kringle-like	8038594	3000761	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Kringle-like	8038598	3000761	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Hemopexin-like domain	8042812	3001566	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Metalloproteases (zincins), catalytic domain	8091369	3001975	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Kringle-like	8038597	3000761	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Metalloproteases (zincins), catalytic domain	8091369	3001975	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	PGBD-like	8038587	3001357	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A		e1ck7A1	A: Cloacin translocation domain	X: Cloacin translocation domain	H: Cloacin translocation domain	T: Ldl_recept_b	F:	ECOD (20:10:01)
A		e1ck7A2	A: C-terminal subdomain in Lon-related proteases catalytic domains	X: p53 tetramerization domain	H: p53 tetramerization domain	T: Cation_efflux	F:	ECOD (20:10:01)
A		e1ck7A3	A: C-terminal subdomain in Lon-related proteases catalytic domains	X: C-terminal subdomain in Lon-related proteases catalytic domains	H: C-terminal subdomain in Lon-related proteases catalytic domains	T: EGF_CA	F:	ECOD (20:10:01)
A		e1ck7A6	A: HTH	X: HTH	H: winged helix domain	T: EF-hand_1, EF-hand_7	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.390.10	Alpha Beta	3-Layer(aba) Sandwich	Collagenase (Catalytic Domain)	Collagenase (Catalytic Domain)	CATH (4.3.0)
A	2.10.10.10	Mainly Beta	Ribbon	Seminal Fluid Protein PDC-109 (Domain B)	Fibronectin, type II, collagen-binding	CATH (4.3.0)
A	2.110.10.10	Mainly Beta	4 Propeller	Hemopexin	Hemopexin-like domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00413	Matrixin (Peptidase_M10)	Matrixin	The members of this family are enzymes that cleave peptides. These proteases require zinc for catalysis.	Domain
A	PF00040	Fibronectin type II domain (fn2)	Fibronectin type II domain		Domain
A	PF01471	Putative peptidoglycan binding domain (PG_binding_1)	Putative peptidoglycan binding domain	This domain is composed of three alpha helices [1]. This domain is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation [2]. This domain may have a general peptidoglycan binding function. This family is ...	This domain is composed of three alpha helices [1]. This domain is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation [2]. This domain may have a general peptidoglycan binding function. This family is found N-terminal to the catalytic domain of matrixins [3]. The domain is found to bind peptidoglycan experimentally [4].	Domain
A	PF00045	Hemopexin (Hemopexin)	Hemopexin	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	PROTEIN (GELATINASE A)	peptidase activity catalytic activity, acting on a protein metallopeptidase activity hydrolase activity catalytic activity serine hydrolase activity serine-type peptidase activity serine-type endopeptidase activity endopeptidase activity protein binding binding fibronectin binding metalloendopeptidase activity cation binding peptidase activity catalytic activity, acting on a protein metallopeptidase activity hydrolase activity catalytic activity serine hydrolase activity serine-type peptidase activity serine-type endopeptidase activity endopeptidase activity protein binding binding fibronectin binding metalloendopeptidase activity cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding	response to stimulus response to chemical response to xenobiotic stimulus developmental process heart development multicellular organism development multicellular organismal process anatomical structure development animal organ development circulatory system development system development regulation of tube diameter regulation of biological process system process response to stimulus response to chemical response to xenobiotic stimulus developmental process heart development multicellular organism development multicellular organismal process anatomical structure development animal organ development circulatory system development system development regulation of tube diameter regulation of biological process system process regulation of tube size regulation of system process negative regulation of biological process biological regulation negative regulation of vasoconstriction circulatory system process regulation of blood circulation vascular process in circulatory system regulation of vasoconstriction regulation of multicellular organismal process blood vessel diameter maintenance regulation of biological quality negative regulation of multicellular organismal process vasoconstriction blood circulation regulation of anatomical structure size cellular response to stimulus regulation of cellular process cell surface receptor signaling pathway signaling cell surface receptor protein tyrosine kinase signaling pathway cell communication cellular process signal transduction enzyme-linked receptor protein signaling pathway ephrin receptor signaling pathway cellular component organization extracellular matrix organization cellular component organization or biogenesis extracellular structure organization external encapsulating structure organization catabolic process metabolic process primary metabolic process protein catabolic process protein metabolic process macromolecule metabolic process macromolecule catabolic process multi-multicellular organism process reproductive process parturition multi-organism reproductive process cell migration cell motility ossification direct ossification intramembranous ossification response to electrical stimulus response to abiotic stimulus gonad development reproductive system development female gonad development sex differentiation female sex differentiation development of primary female sexual characteristics developmental process involved in reproduction development of primary sexual characteristics reproductive structure development ovarian follicle development cellular response to stress response to stress response to fluid shear stress cellular response to fluid shear stress ovulation cycle process ovulation sexual reproduction female gamete generation gamete generation ovulation from ovarian follicle ovulation cycle rhythmic process multicellular organismal reproductive process cellular response to acid chemical cellular response to amino acid stimulus response to acid chemical cellular response to chemical stimulus response to amino acid response to decreased oxygen levels response to hypoxia response to oxygen levels epithelium development prostate gland development gland development morphogenesis of an epithelium urogenital system development tissue development prostate gland epithelium morphogenesis prostate gland morphogenesis tissue morphogenesis anatomical structure morphogenesis gland morphogenesis animal organ morphogenesis response to hydrogen peroxide response to oxidative stress response to oxygen-containing compound response to reactive oxygen species response to peptide cellular response to interleukin-1 response to cytokine cellular response to cytokine stimulus response to interleukin-1 trophoblast cell migration ameboidal-type cell migration female pregnancy embryo implantation blood vessel maturation developmental maturation vasculature development anatomical structure maturation blood vessel development cell adhesion regulation of cell adhesion negative regulation of cellular process negative regulation of cell adhesion positive regulation of cell communication intrinsic apoptotic signaling pathway in response to oxidative stress neuron apoptotic process positive regulation of signal transduction regulation of oxidative stress-induced intrinsic apoptotic signaling pathway positive regulation of biological process regulation of signal transduction regulation of programmed cell death regulation of intrinsic apoptotic signaling pathway positive regulation of oxidative stress-induced neuron intrinsic apoptotic signaling pathway intracellular signal transduction positive regulation of apoptotic signaling pathway positive regulation of response to stimulus regulation of intracellular signal transduction intrinsic apoptotic signaling pathway positive regulation of neuron apoptotic process positive regulation of cellular process regulation of oxidative stress-induced neuron intrinsic apoptotic signaling pathway regulation of signaling positive regulation of programmed cell death regulation of apoptotic process positive regulation of intracellular signal transduction cell death positive regulation of apoptotic process neuron intrinsic apoptotic signaling pathway in response to oxidative stress apoptotic signaling pathway regulation of response to stimulus positive regulation of oxidative stress-induced intrinsic apoptotic signaling pathway regulation of cell communication positive regulation of intrinsic apoptotic signaling pathway apoptotic process programmed cell death regulation of neuron apoptotic process regulation of apoptotic signaling pathway positive regulation of signaling collagen catabolic process collagen metabolic process response to hormone response to endogenous stimulus response to estrogen cellular developmental process cell projection organization cell development neuron projection development regeneration response to axon injury neuron projection regeneration neurogenesis axon regeneration neuron differentiation cell differentiation response to wounding peripheral nervous system axon regeneration plasma membrane bounded cell projection organization nervous system development axon development generation of neurons neuron development blood vessel morphogenesis tube development angiogenesis tube morphogenesis anatomical structure formation involved in morphogenesis head development face morphogenesis head morphogenesis face development body morphogenesis formation of primary germ layer embryonic morphogenesis embryo development gastrulation endoderm development endoderm formation endodermal cell differentiation response to activity bone trabecula formation skeletal system development bone trabecula morphogenesis skeletal system morphogenesis trabecula formation trabecula morphogenesis regulation of vascular associated smooth muscle cell proliferation cell population proliferation positive regulation of vascular associated smooth muscle cell proliferation regulation of smooth muscle cell proliferation positive regulation of cell population proliferation smooth muscle cell proliferation positive regulation of smooth muscle cell proliferation regulation of cell population proliferation muscle cell proliferation vascular associated smooth muscle cell proliferation tissue remodeling response to retinoic acid response to lipid cellular component disassembly extracellular matrix disassembly response to nitrogen compound response to amyloid-beta response to mechanical stimulus response to external stimulus cellular response to oxidative stress cellular response to chemical stress cellular response to oxygen-containing compound cellular response to reactive oxygen species positive regulation of locomotion regulation of cell motility positive regulation of cell migration regulation of locomotion positive regulation of cell motility regulation of cell migration locomotion cell chemotaxis chemotaxis macrophage chemotaxis macrophage migration leukocyte migration taxis immune system process mononuclear cell migration myeloid leukocyte migration leukocyte chemotaxis cellular response to lipid response to estradiol cellular response to estradiol stimulus response to nicotine response to light stimulus cellular response to radiation response to UV cellular response to environmental stimulus cellular response to UV-A cellular response to light stimulus response to radiation cellular response to abiotic stimulus cellular response to UV response to UV-A proteolysis luteinization response to hyperoxia response to increased oxygen levels	intracellular anatomical structure intracellular membraneless organelle sarcomere intracellular organelle cellular anatomical structure organelle membraneless organelle contractile muscle fiber cytoplasm supramolecular fiber myofibril supramolecular polymer supramolecular complex extracellular region intracellular anatomical structure intracellular membraneless organelle sarcomere intracellular organelle cellular anatomical structure organelle membraneless organelle contractile muscle fiber cytoplasm supramolecular fiber myofibril supramolecular polymer supramolecular complex extracellular region extracellular space membrane-bounded organelle mitochondrion intracellular membrane-bounded organelle cell periphery plasma membrane membrane extracellular matrix external encapsulating structure nucleus

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR021158	Peptidase M10A, cysteine switch, zinc binding site	Binding Site
A	IPR000562	Fibronectin type II domain	Domain
A	IPR021190	Peptidase M10A	Family
A	IPR006026	Peptidase, metallopeptidase	Domain
A	IPR033739	Peptidase M10A, catalytic domain	Domain
A	IPR018486	Hemopexin, conserved site	Conserved Site
A	IPR036375	Hemopexin-like domain superfamily	Homologous Superfamily
A	IPR036943	Fibronectin type II domain superfamily	Homologous Superfamily
A	IPR036365	PGBD-like superfamily	Homologous Superfamily
A	IPR001818	Peptidase M10, metallopeptidase	Domain
A	IPR013806	Kringle-like fold	Homologous Superfamily
A	IPR024079	Metallopeptidase, catalytic domain superfamily	Homologous Superfamily
A	IPR018487	Hemopexin-like repeats	Repeat
A	IPR000585	Hemopexin-like domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: P08253	Marfan syndrome glioblastoma rheumatoid arthritis thoracic aortic aneurysm oral submucous fibrosis nasopharyngeal carcinoma testicular germ cell tumor breast carcinoma extrahepatic cholestasis cirrhosis of liver myocardial infarction aortic aneurysm Neointima diabetic polyneuropathy lupus nephritis Marfan syndrome glioblastoma rheumatoid arthritis thoracic aortic aneurysm oral submucous fibrosis nasopharyngeal carcinoma testicular germ cell tumor breast carcinoma extrahepatic cholestasis cirrhosis of liver myocardial infarction aortic aneurysm Neointima diabetic polyneuropathy lupus nephritis bone disease pulmonary emphysema colorectal cancer alcoholic liver cirrhosis osteosarcoma calcinosis pulmonary fibrosis giant cell glioblastoma multicentric osteolysis, nodulosis, and arthropathy hypertensive disorder cutaneous leishmaniasis aortic disease diabetic autonomic neuropathy diabetic neuropathy bone cancer malignant glioma pancreatic intraductal papillary-mucinous carcinoma drug-induced liver injury malignant pancreatic neoplasm pilocytic astrocytoma cancer psoriasis adrenal cortex adenoma subependymal giant cell astrocytoma hypospadias interstitial lung disease cystic fibrosis ulcerative colitis intracerebral hemorrhage X-linked mixed deafness with perilymphatic gusher lung cancer malignant mesothelioma pancreatic intraductal papillary-mucinous neoplasm Duchenne muscular dystrophy malignant tumor of nasopharynx breast disease primitive neuroectodermal tumor fetal growth restriction stomach disease adrenal cortex carcinoma hepatocellular carcinoma idiopathic interstitial pneumonia Torg-Winchester syndrome intervertebral disc degenerative disorder diabetes mellitus Kienbock disease atopic eczema lung carcinoma Becker muscular dystrophy pancreatic ductal adenocarcinoma breast cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia Emery-Dreifuss muscular dystrophy prostate disease medulloblastoma alcohol abuse colorectal carcinoma nasopharyngeal neoplasm intestinal disease astrocytic tumor oligodendroglioma liver disease atypical teratoid rhabdoid tumor osteonecrosis lung disease ovarian cancer

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A	OPM	Monotopic/peripheral	Alpha + Beta monotopic/peripheral	PGBD superfamily	Putative peptidoglycan binding domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.