1EFG
THE CRYSTAL STRUCTURE OF ELONGATION FACTOR G COMPLEXED WITH GDP, AT 2.7 ANGSTROMS RESOLUTION
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1efga1 | All beta proteins | Reductase/isomerase/elongation factor common domain | Translation proteins | Elongation factors | Elongation factor G (EF-G), domain II | (Thermus thermophilus ) [TaxId: 274 ], | SCOPe (2.08) |
A | d1efga2 | Alpha and beta proteins (a/b) | P-loop containing nucleoside triphosphate hydrolases | P-loop containing nucleoside triphosphate hydrolases | G proteins | Elongation factor G (EF-G), N-terminal (G) domain | (Thermus thermophilus ) [TaxId: 274 ], | SCOPe (2.08) |
A | d1efga3 | Alpha and beta proteins (a+b) | Ribosomal protein S5 domain 2-like | Ribosomal protein S5 domain 2-like | Translational machinery components | Elongation factor G (EF-G), domain IV | (Thermus thermophilus ) [TaxId: 274 ], | SCOPe (2.08) |
A | d1efga4 | Alpha and beta proteins (a+b) | Ferredoxin-like | EF-G C-terminal domain-like | EF-G/eEF-2 domains III and V | Elongation factor G (EF-G) | (Thermus thermophilus ) [TaxId: 274 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | GTP_EFTU_D2 | e1efgA1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: GTP_EFTU_D2 | ECOD (1.6) |
A | EFG_IV | e1efgA3 | A: a+b two layers | X: Ribosomal protein S5 domain 2-like (From Topology) | H: Ribosomal protein S5 domain 2-like (From Topology) | T: Ribosomal protein S5 domain 2-like | F: EFG_IV | ECOD (1.6) |
A | EFG_C | e1efgA2 | A: a+b two layers | X: Alpha-beta plaits | H: EF-G C-terminal domain-like (From Topology) | T: EF-G C-terminal domain-like | F: EFG_C | ECOD (1.6) |
A | MnmE_helical_2nd | e1efgA4 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: MnmE_helical_2nd | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00679 | Elongation factor G C-terminus (EFG_C) | Elongation factor G C-terminus | This domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold. | Domain | |
PF00009 | Elongation factor Tu GTP binding domain (GTP_EFTU) | Elongation factor Tu GTP binding domain | This domain contains a P-loop motif, also found in several other families such as Pfam:PF00071, Pfam:PF00025 and Pfam:PF00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains. | Domain | |
PF03144 | Elongation factor Tu domain 2 (GTP_EFTU_D2) | Elongation factor Tu domain 2 | Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA [1]. This domain is also found in other proteins such as e ... | Domain | |
PF03764 | Elongation factor G, domain IV (EFG_IV) | Elongation factor G, domain IV | This domain is found in elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopts a ribosomal protein S5 domain 2-like fold. | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR005225 | Small GTP-binding domain | Domain | |
IPR005517 | Translation elongation factor EFG/EF2, domain IV | Domain | |
IPR004540 | Translation elongation factor EFG/EF2 | Family | |
IPR000795 | Translational (tr)-type GTP-binding domain | Domain | |
IPR000640 | Elongation factor EFG, domain V-like | Domain | |
IPR031157 | Tr-type G domain, conserved site | Conserved Site | |
IPR009022 | Elongation factor G, domain III | Domain | |
IPR035647 | EF-G domain III/V-like | Homologous Superfamily | |
IPR041095 | Elongation Factor G, domain II | Domain | |
IPR004161 | Translation elongation factor EFTu-like, domain 2 | Domain | |
IPR047872 | Elongation factor G, domain IV | Domain | |
IPR009000 | Translation protein, beta-barrel domain superfamily | Homologous Superfamily | |
IPR020568 | Ribosomal protein uS5 domain 2-type superfamily | Homologous Superfamily | |
IPR035649 | EFG, domain V | Domain | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily | |
IPR014721 | Small ribosomal subunit protein uS5 domain 2-type fold, subgroup | Homologous Superfamily |