1FYV | pdb_00001fyv

CRYSTAL STRUCTURE OF THE TIR DOMAIN OF HUMAN TLR1

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1fyva_	Alpha and beta proteins (a/b)	Flavodoxin-like	Toll/Interleukin receptor TIR domain	Toll/Interleukin receptor TIR domain	Toll-like receptor 1, TLR1	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Toll/Interleukin receptor TIR domain	8031674	4003648	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Toll/Interleukin receptor TIR domain	8044052	3001184	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	B12-binding	e1fyvA1	A: beta barrels	X: HTH	H: HTH	T: winged helix domain	F: B12-binding	ECOD (v294.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.50.10140	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Toll/interleukin-1 receptor homology (TIR) domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF01582	TIR domain (TIR)	TIR domain	The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular signalling domain found in MyD88, interleukin 1 receptor and the Toll receptor. It contains three highly-conserved regions, and mediates protein-protein interactions between th ...	The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular signalling domain found in MyD88, interleukin 1 receptor and the Toll receptor. It contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. TIR-like motifs are also found in plant proteins thought to be involved in resistance to disease. When activated, TIR domains recruit cytoplasmic adaptor proteins MyD88 (Swiss:Q99836) and TOLLIP (Toll interacting protein, Swiss:Q9H0E2). In turn, these associate with various kinases to set off signalling cascades [3].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	TOLL-LIKE RECEPTOR 1	molecular transducer activity signaling receptor activity protein binding binding Toll-like receptor 2 binding signaling receptor binding Toll-like receptor binding lipid binding lipopeptide binding identical protein binding transmembrane signaling receptor activity	response to stimulus immune response immune system process interleukin-6 production multicellular organismal process regulation of cellular process positive regulation of biological process positive regulation of macromolecule biosynthetic process positive regulation of interleukin-6 production regulation of interleukin-6 production positive regulation of metabolic process positive regulation of biosynthetic process regulation of cytokine production cytokine production response to stimulus immune response immune system process interleukin-6 production multicellular organismal process regulation of cellular process positive regulation of biological process positive regulation of macromolecule biosynthetic process positive regulation of interleukin-6 production regulation of interleukin-6 production positive regulation of metabolic process positive regulation of biosynthetic process regulation of cytokine production cytokine production regulation of multicellular organismal process positive regulation of macromolecule metabolic process positive regulation of cellular process regulation of biosynthetic process regulation of biological process biological regulation regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of gene expression biosynthetic process positive regulation of gene expression positive regulation of multicellular organismal process regulation of macromolecule biosynthetic process metabolic process cellular process macromolecule metabolic process positive regulation of cytokine production regulation of metabolic process cellular response to stimulus positive regulation of cell communication positive regulation of response to biotic stimulus immune response-regulating cell surface receptor signaling pathway positive regulation of signal transduction pattern recognition receptor signaling pathway regulation of signal transduction response to biotic stimulus cell communication immune response-activating signaling pathway positive regulation of immune response regulation of immune system process signal transduction positive regulation of immune system process cell surface toll-like receptor signaling pathway innate immune response-activating signaling pathway positive regulation of pattern recognition receptor signaling pathway response to other organism immune response-activating cell surface receptor signaling pathway regulation of innate immune response response to external stimulus regulation of toll-like receptor 2 signaling pathway regulation of response to stimulus defense response to other organism regulation of pattern recognition receptor signaling pathway positive regulation of defense response activation of innate immune response regulation of immune response activation of immune response regulation of defense response regulation of response to biotic stimulus biological process involved in interspecies interaction between organisms regulation of response to external stimulus signaling innate immune response activating cell surface receptor signaling pathway positive regulation of toll-like receptor 2 signaling pathway positive regulation of response to stimulus positive regulation of response to external stimulus immune response-regulating signaling pathway regulation of response to stress response to stress innate immune response toll-like receptor 2 signaling pathway response to external biotic stimulus cell surface pattern recognition receptor signaling pathway regulation of signaling positive regulation of innate immune response cell surface receptor signaling pathway defense response defense response to symbiont regulation of cell communication positive regulation of signaling detection of bacterial lipoprotein detection of external biotic stimulus detection of triacyl bacterial lipopeptide detection of molecule of bacterial origin detection of biotic stimulus response to bacterial lipoprotein detection of bacterium response to bacterial lipopeptide detection of stimulus response to bacterium response to chemical response to triacyl bacterial lipopeptide detection of chemical stimulus detection of other organism detection of bacterial lipopeptide response to molecule of bacterial origin toll-like receptor signaling pathway toll-like receptor TLR1:TLR2 signaling pathway positive regulation of interleukin-8 production interleukin-8 production regulation of interleukin-8 production inflammatory response macrophage activation cell activation myeloid leukocyte activation leukocyte activation regulation of tumor necrosis factor production positive regulation of tumor necrosis factor superfamily cytokine production tumor necrosis factor superfamily cytokine production positive regulation of tumor necrosis factor production tumor necrosis factor production regulation of tumor necrosis factor superfamily cytokine production leukocyte activation involved in inflammatory response microglial cell activation glial cell activation neuroinflammatory response cellular response to bacterial lipoprotein cellular response to molecule of bacterial origin cellular response to biotic stimulus cellular response to bacterial lipopeptide cellular response to triacyl bacterial lipopeptide	cellular anatomical structure membrane Toll-like receptor 1-Toll-like receptor 2 protein complex cell periphery protein-containing complex plasma membrane protein complex plasma membrane plasma membrane signaling receptor complex membrane protein complex signaling receptor complex membrane microdomain membrane raft membrane-bounded organelle intracellular anatomical structure cellular anatomical structure membrane Toll-like receptor 1-Toll-like receptor 2 protein complex cell periphery protein-containing complex plasma membrane protein complex plasma membrane plasma membrane signaling receptor complex membrane protein complex signaling receptor complex membrane microdomain membrane raft membrane-bounded organelle intracellular anatomical structure intracellular vesicle phagocytic vesicle intracellular membrane-bounded organelle intracellular organelle phagocytic vesicle membrane cytoplasmic vesicle membrane bounding membrane of organelle cytoplasmic vesicle vesicle membrane organelle endocytic vesicle membrane cytoplasm vesicle organelle membrane endocytic vesicle Golgi apparatus endomembrane system plasma membrane raft plasma membrane region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR000157	Toll/interleukin-1 receptor homology (TIR) domain	Domain
A	IPR003591	Leucine-rich repeat, typical subtype	Repeat
A	IPR001611	Leucine-rich repeat	Repeat
A	IPR017241	Toll-like receptor	Family
A	IPR032675	Leucine-rich repeat domain superfamily	Homologous Superfamily
A	IPR035897	Toll/interleukin-1 receptor homology (TIR) domain superfamily	Homologous Superfamily
A	IPR000483	Cysteine-rich flanking region, C-terminal	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	: Q15399	leprosy malignant glioma ovarian cancer ulcerative colitis Adverse reaction to drug hepatocellular carcinoma Lyme disease malignant mesothelioma pilocytic astrocytoma allergic rhinitis breast cancer IgA glomerulonephritis lung cancer malignant ependymoma osteosarcoma leprosy malignant glioma ovarian cancer ulcerative colitis Adverse reaction to drug hepatocellular carcinoma Lyme disease malignant mesothelioma pilocytic astrocytoma allergic rhinitis breast cancer IgA glomerulonephritis lung cancer malignant ependymoma osteosarcoma transitional cell carcinoma alopecia areata brain injury cutaneous lupus erythematosus glioblastoma lung carcinoma

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.