1G6K | pdb_00001g6k

Crystal structure of glucose dehydrogenase mutant E96A complexed with NAD+

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D [auth F]	d1g6kf_	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	Tyrosine-dependent oxidoreductases	Glucose dehydrogenase	(Priestia megaterium ) [TaxId: 1404 ],	SCOPe (2.08)
C [auth E]	d1g6ke_	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	Tyrosine-dependent oxidoreductases	Glucose dehydrogenase	(Priestia megaterium ) [TaxId: 1404 ],	SCOPe (2.08)
B	d1g6kb_	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	Tyrosine-dependent oxidoreductases	Glucose dehydrogenase	(Priestia megaterium ) [TaxId: 1404 ],	SCOPe (2.08)
A	d1g6ka_	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	Tyrosine-dependent oxidoreductases	Glucose dehydrogenase	(Priestia megaterium ) [TaxId: 1404 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D [auth F]	SCOP2B Superfamily	SDR-like	8057179	3000038	SCOP2B (2022-06-29)
C [auth E]	SCOP2B Superfamily	SDR-like	8057179	3000038	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	SDR-like	8057179	3000038	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	SDR-like	8057179	3000038	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D [auth F]	KR	e1g6kF1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: KR	ECOD (v294.1)
C [auth E]	KR	e1g6kE1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: KR	ECOD (v294.1)
B	KR	e1g6kB1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: KR	ECOD (v294.1)
A	KR	e1g6kA1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: KR	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D [auth F]	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
C [auth E]	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
B	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
A	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C [auth E], D [auth F]	GLUCOSE 1-DEHYDROGENASE	oxidoreductase activity oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor oxidoreductase activity, acting on CH-OH group of donors glucose dehydrogenase activity glucose 1-dehydrogenase [NAD(P)+] activity glucose 1-dehydrogenase (NAD+) activity catalytic activity glucose 1-dehydrogenase (NADP+) activity	sporulation resulting in formation of a cellular spore developmental process anatomical structure morphogenesis anatomical structure formation involved in morphogenesis anatomical structure development sporulation	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C [auth E], D [auth F]	IPR036291	NAD(P)-binding domain superfamily	Homologous Superfamily
A, B, C [auth E], D [auth F]	IPR002347	Short-chain dehydrogenase/reductase SDR	Family
A, B, C [auth E], D [auth F]	IPR020904	Short-chain dehydrogenase/reductase, conserved site	Conserved Site

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.