1GG4
CRYSTAL STRUCTURE OF ESCHERICHIA COLI UDPMURNAC-TRIPEPTIDE D-ALANYL-D-ALANINE-ADDING ENZYME (MURF) AT 2.3 ANGSTROM RESOLUTION
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | MurEF | 8003727 | 4000234 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | MurD catalytic domain-like | 8003728 | 3000107 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | MurE/MurF N-terminal domain | 8003731 | 3000146 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | MurD peptide-binding domain-like | 8091454 | 3001290 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | MurD catalytic domain-like | 8003728 | 3000107 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | MurE/MurF N-terminal domain | 8003731 | 3000146 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | MurD peptide-binding domain-like | 8091454 | 3001290 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Mur_ligase_M | e1gg4A1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Mur_ligase_M | ECOD (1.6) |
A | Mur_ligase_1 | e1gg4A3 | A: a/b three-layered sandwiches | X: MurF and HprK N-domain-like (From Topology) | H: MurF and HprK N-domain-like (From Topology) | T: MurF and HprK N-domain-like | F: Mur_ligase_1 | ECOD (1.6) |
A | Mur_ligase_C | e1gg4A2 | A: a/b three-layered sandwiches | X: MurD-like peptide ligases, peptide-binding domain (From Topology) | H: MurD-like peptide ligases, peptide-binding domain (From Topology) | T: MurD-like peptide ligases, peptide-binding domain | F: Mur_ligase_C | ECOD (1.6) |
B | Mur_ligase_M | e1gg4B1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: Mur_ligase_M | ECOD (1.6) |
B | Mur_ligase_1 | e1gg4B3 | A: a/b three-layered sandwiches | X: MurF and HprK N-domain-like (From Topology) | H: MurF and HprK N-domain-like (From Topology) | T: MurF and HprK N-domain-like | F: Mur_ligase_1 | ECOD (1.6) |
B | Mur_ligase_C | e1gg4B2 | A: a/b three-layered sandwiches | X: MurD-like peptide ligases, peptide-binding domain (From Topology) | H: MurD-like peptide ligases, peptide-binding domain (From Topology) | T: MurD-like peptide ligases, peptide-binding domain | F: Mur_ligase_C | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.90.190.20 | Alpha Beta | Alpha-Beta Complex | Protein-Tyrosine Phosphatase | Chain A | CATH (4.3.0) |
A | 3.40.1190.10 | Alpha Beta | 3-Layer(aba) Sandwich | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | Mur-like, catalytic domain | CATH (4.3.0) |
A | 3.40.1390.10 | Alpha Beta | 3-Layer(aba) Sandwich | Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase | Chain: A, domain 1 | CATH (4.3.0) |
B | 3.90.190.20 | Alpha Beta | Alpha-Beta Complex | Protein-Tyrosine Phosphatase | Chain A | CATH (4.3.0) |
B | 3.40.1190.10 | Alpha Beta | 3-Layer(aba) Sandwich | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | Mur-like, catalytic domain | CATH (4.3.0) |
B | 3.40.1390.10 | Alpha Beta | 3-Layer(aba) Sandwich | Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase | Chain: A, domain 1 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF08245 | Mur ligase middle domain (Mur_ligase_M) | Mur ligase middle domain | Domain | ||
PF02875 | Mur ligase, glutamate ligase domain (Mur_ligase_C) | Mur ligase, glutamate ligase domain | This entry contains a number of related ligase enzymes which have EC numbers 6.3.2.* which includes: MurC (Swiss:P17952), MurD (Swiss:P14900), MurE (Swiss:P22188), MurF (Swiss:P11880), Mpl (Swiss:P37773) and FolC (Swiss:P08192). MurC, MurD, MurE and ... | Domain | |
PF01225 | Mur ligase family, catalytic domain (Mur_ligase) | Mur ligase family, catalytic domain | This family contains a number of related ligase enzymes which have EC numbers 6.3.2.*. This family includes: MurC (Swiss:P17952), MurD (Swiss:P14900), MurE (Swiss:P22188), MurF (Swiss:P11880), Mpl (Swiss:P37773) and FolC (Swiss:P08192). MurC, MurD, ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR004101 | Mur ligase, C-terminal | Domain | |
IPR035911 | MurE/MurF, N-terminal | Homologous Superfamily | |
IPR036565 | Mur-like, catalytic domain superfamily | Homologous Superfamily | |
IPR000713 | Mur ligase, N-terminal catalytic domain | Domain | |
IPR036615 | Mur ligase, C-terminal domain superfamily | Homologous Superfamily | |
IPR013221 | Mur ligase, central | Domain | |
IPR051046 | MurCDEF Family: Cell Wall and Coenzyme F430 Synthesis | Family | |
IPR005863 | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | Family |