1GL4
Nidogen-1 G2/Perlecan IG3 Complex
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1gl4a1 | Alpha and beta proteins (a+b) | GFP-like | GFP-like | Domain G2 of nidogen-1 | Domain G2 of nidogen-1 | MOUSE (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
A | d1gl4a2 | Small proteins | Knottins (small inhibitors, toxins, lectins) | EGF/Laminin | EGF-like domain of nidogen-1 | EGF-like domain of nidogen-1 | MOUSE (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
B | d1gl4b_ | All beta proteins | Immunoglobulin-like beta-sandwich | Immunoglobulin | I set domains | Perlecan Ig3 domain | MOUSE (Mus musculus ) [TaxId: 10090 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Domain G2 of nidogen-1 | 8023575 | 4003508 | SCOP2 (2022-06-29) |
A | SCOP2 Family | EGF-like domain of nidogen-1 | 8023577 | 4003751 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | GFP-like | 8035955 | 3000576 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | EGF/Laminin-like | 8035957 | 3000412 | SCOP2 (2022-06-29) |
B | SCOP2 Family | I set domains | 8054796 | 4007543 | SCOP2 (2022-06-29) |
B | SCOP2 Superfamily | Immunoglobulin (Ig) domain-like | 8054797 | 3000071 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | G2F | e1gl4A1 | A: beta barrels | X: GFP-like (From Topology) | H: GFP-like (From Topology) | T: GFP-like | F: G2F | ECOD (1.6) |
A | hEGF_1 | e1gl4A2 | A: few secondary structure elements | X: EGF-like | H: EGF-related | T: EGF/Laminin | F: hEGF_1 | ECOD (1.6) |
B | I-set_2 | e1gl4B1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: I-set_2 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.40.155.10 | Mainly Beta | Beta Barrel | Green Fluorescent Protein | Green fluorescent protein | CATH (4.3.0) |
B | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF07474 | G2F domain (G2F) | G2F domain | Nidogen, an invariant component of basement membranes, is a multifunctional protein that interacts with most other major basement membrane proteins. The G2 fragment or (G2F domain) contains binding sites for collagen IV and perlecan. The structure is ... | Domain | |