1HA7 | pdb_00001ha7

STRUCTURE OF A LIGHT-HARVESTING PHYCOBILIPROTEIN, C-PHYCOCYANIN FROM SPIRULINA PLATENSIS AT 2.2A RESOLUTION

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d1ha7d_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	Phycocyanin beta subunit	(Limnospira platensis ) [TaxId: 118562 ],	SCOPe (2.08)
F	d1ha7f_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	Phycocyanin beta subunit	(Limnospira platensis ) [TaxId: 118562 ],	SCOPe (2.08)
H	d1ha7h_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	Phycocyanin beta subunit	(Limnospira platensis ) [TaxId: 118562 ],	SCOPe (2.08)
J	d1ha7j_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	Phycocyanin beta subunit	(Limnospira platensis ) [TaxId: 118562 ],	SCOPe (2.08)
L	d1ha7l_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	Phycocyanin beta subunit	(Limnospira platensis ) [TaxId: 118562 ],	SCOPe (2.08)
N	d1ha7n_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	Phycocyanin beta subunit	(Limnospira platensis ) [TaxId: 118562 ],	SCOPe (2.08)
P	d1ha7p_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	Phycocyanin beta subunit	(Limnospira platensis ) [TaxId: 118562 ],	SCOPe (2.08)
R	d1ha7r_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	Phycocyanin beta subunit	(Limnospira platensis ) [TaxId: 118562 ],	SCOPe (2.08)
V	d1ha7v_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	Phycocyanin beta subunit	(Limnospira platensis ) [TaxId: 118562 ],	SCOPe (2.08)
X	d1ha7x_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	Phycocyanin beta subunit	(Limnospira platensis ) [TaxId: 118562 ],	SCOPe (2.08)
T	d1ha7t_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	Phycocyanin beta subunit	(Limnospira platensis ) [TaxId: 118562 ],	SCOPe (2.08)
B	d1ha7b_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	Phycocyanin beta subunit	(Limnospira platensis ) [TaxId: 118562 ],	SCOPe (2.08)
A	d1ha7a_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	Phycocyanin alpha subunit	(Limnospira platensis ) [TaxId: 118562 ],	SCOPe (2.08)
C	d1ha7c_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	Phycocyanin alpha subunit	(Limnospira platensis ) [TaxId: 118562 ],	SCOPe (2.08)
G	d1ha7g_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	Phycocyanin alpha subunit	(Limnospira platensis ) [TaxId: 118562 ],	SCOPe (2.08)
I	d1ha7i_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	Phycocyanin alpha subunit	(Limnospira platensis ) [TaxId: 118562 ],	SCOPe (2.08)
M	d1ha7m_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	Phycocyanin alpha subunit	(Limnospira platensis ) [TaxId: 118562 ],	SCOPe (2.08)
O	d1ha7o_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	Phycocyanin alpha subunit	(Limnospira platensis ) [TaxId: 118562 ],	SCOPe (2.08)
Q	d1ha7q_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	Phycocyanin alpha subunit	(Limnospira platensis ) [TaxId: 118562 ],	SCOPe (2.08)
S	d1ha7s_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	Phycocyanin alpha subunit	(Limnospira platensis ) [TaxId: 118562 ],	SCOPe (2.08)
U	d1ha7u_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	Phycocyanin alpha subunit	(Limnospira platensis ) [TaxId: 118562 ],	SCOPe (2.08)
W	d1ha7w_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	Phycocyanin alpha subunit	(Limnospira platensis ) [TaxId: 118562 ],	SCOPe (2.08)
K	d1ha7k_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	Phycocyanin alpha subunit	(Limnospira platensis ) [TaxId: 118562 ],	SCOPe (2.08)
E	d1ha7e_	All alpha proteins	Globin-like	Globin-like	Phycocyanin-like phycobilisome proteins	Phycocyanin alpha subunit	(Limnospira platensis ) [TaxId: 118562 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	Globin-like	8039459	3000554	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Globin-like	8039459	3000554	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Globin-like	8039459	3000554	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Globin-like	8039459	3000554	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Globin-like	8039459	3000554	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Globin-like	8039459	3000554	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	Globin-like	8039459	3000554	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	Globin-like	8039459	3000554	SCOP2B (2022-06-29)
V	SCOP2B Superfamily	Globin-like	8039459	3000554	SCOP2B (2022-06-29)
X	SCOP2B Superfamily	Globin-like	8039459	3000554	SCOP2B (2022-06-29)
T	SCOP2B Superfamily	Globin-like	8039459	3000554	SCOP2B (2022-06-29)
B	SCOP2 Family	Phycocyanin-like phycobilisome proteins	8027080	4000579	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	Globin-like	8039459	3000554	SCOP2 (2022-06-29)
A	SCOP2B Superfamily	Globin-like	8036970	3000554	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Globin-like	8036970	3000554	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Globin-like	8036970	3000554	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Globin-like	8036970	3000554	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Globin-like	8036970	3000554	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	Globin-like	8036970	3000554	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	Globin-like	8036970	3000554	SCOP2B (2022-06-29)
S	SCOP2B Superfamily	Globin-like	8036970	3000554	SCOP2B (2022-06-29)
U	SCOP2B Superfamily	Globin-like	8036970	3000554	SCOP2B (2022-06-29)
W	SCOP2B Superfamily	Globin-like	8036970	3000554	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Globin-like	8036970	3000554	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Globin-like	8036970	3000554	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Phycobilisome	e1ha7D1	A: alpha arrays	X: Globin-like (From Topology)	H: Globin-like (From Topology)	T: Globin-like	F: Phycobilisome	ECOD (1.6)
F	Phycobilisome	e1ha7F1	A: alpha arrays	X: Globin-like (From Topology)	H: Globin-like (From Topology)	T: Globin-like	F: Phycobilisome	ECOD (1.6)
H	Phycobilisome	e1ha7H1	A: alpha arrays	X: Globin-like (From Topology)	H: Globin-like (From Topology)	T: Globin-like	F: Phycobilisome	ECOD (1.6)
J	Phycobilisome	e1ha7J1	A: alpha arrays	X: Globin-like (From Topology)	H: Globin-like (From Topology)	T: Globin-like	F: Phycobilisome	ECOD (1.6)
L	Phycobilisome	e1ha7L1	A: alpha arrays	X: Globin-like (From Topology)	H: Globin-like (From Topology)	T: Globin-like	F: Phycobilisome	ECOD (1.6)
N	Phycobilisome	e1ha7N1	A: alpha arrays	X: Globin-like (From Topology)	H: Globin-like (From Topology)	T: Globin-like	F: Phycobilisome	ECOD (1.6)
P	Phycobilisome	e1ha7P1	A: alpha arrays	X: Globin-like (From Topology)	H: Globin-like (From Topology)	T: Globin-like	F: Phycobilisome	ECOD (1.6)
R	Phycobilisome	e1ha7R1	A: alpha arrays	X: Globin-like (From Topology)	H: Globin-like (From Topology)	T: Globin-like	F: Phycobilisome	ECOD (1.6)
V	Phycobilisome	e1ha7V1	A: alpha arrays	X: Globin-like (From Topology)	H: Globin-like (From Topology)	T: Globin-like	F: Phycobilisome	ECOD (1.6)
X	Phycobilisome	e1ha7X1	A: alpha arrays	X: Globin-like (From Topology)	H: Globin-like (From Topology)	T: Globin-like	F: Phycobilisome	ECOD (1.6)
T	Phycobilisome	e1ha7T1	A: alpha arrays	X: Globin-like (From Topology)	H: Globin-like (From Topology)	T: Globin-like	F: Phycobilisome	ECOD (1.6)
B	Phycobilisome	e1ha7B1	A: alpha arrays	X: Globin-like (From Topology)	H: Globin-like (From Topology)	T: Globin-like	F: Phycobilisome	ECOD (1.6)
A	Phycobilisome	e1ha7A1	A: alpha arrays	X: Globin-like (From Topology)	H: Globin-like (From Topology)	T: Globin-like	F: Phycobilisome	ECOD (1.6)
C	Phycobilisome	e1ha7C1	A: alpha arrays	X: Globin-like (From Topology)	H: Globin-like (From Topology)	T: Globin-like	F: Phycobilisome	ECOD (1.6)
G	Phycobilisome	e1ha7G1	A: alpha arrays	X: Globin-like (From Topology)	H: Globin-like (From Topology)	T: Globin-like	F: Phycobilisome	ECOD (1.6)
I	Phycobilisome	e1ha7I1	A: alpha arrays	X: Globin-like (From Topology)	H: Globin-like (From Topology)	T: Globin-like	F: Phycobilisome	ECOD (1.6)
M	Phycobilisome	e1ha7M1	A: alpha arrays	X: Globin-like (From Topology)	H: Globin-like (From Topology)	T: Globin-like	F: Phycobilisome	ECOD (1.6)
O	Phycobilisome	e1ha7O1	A: alpha arrays	X: Globin-like (From Topology)	H: Globin-like (From Topology)	T: Globin-like	F: Phycobilisome	ECOD (1.6)
Q	Phycobilisome	e1ha7Q1	A: alpha arrays	X: Globin-like (From Topology)	H: Globin-like (From Topology)	T: Globin-like	F: Phycobilisome	ECOD (1.6)
S	Phycobilisome	e1ha7S1	A: alpha arrays	X: Globin-like (From Topology)	H: Globin-like (From Topology)	T: Globin-like	F: Phycobilisome	ECOD (1.6)
U	Phycobilisome	e1ha7U1	A: alpha arrays	X: Globin-like (From Topology)	H: Globin-like (From Topology)	T: Globin-like	F: Phycobilisome	ECOD (1.6)
W	Phycobilisome	e1ha7W1	A: alpha arrays	X: Globin-like (From Topology)	H: Globin-like (From Topology)	T: Globin-like	F: Phycobilisome	ECOD (1.6)
K	Phycobilisome	e1ha7K1	A: alpha arrays	X: Globin-like (From Topology)	H: Globin-like (From Topology)	T: Globin-like	F: Phycobilisome	ECOD (1.6)
E	Phycobilisome	e1ha7E1	A: alpha arrays	X: Globin-like (From Topology)	H: Globin-like (From Topology)	T: Globin-like	F: Phycobilisome	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.2.0)
F	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.2.0)
H	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.2.0)
J	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.2.0)
L	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.2.0)
N	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.2.0)
P	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.2.0)
R	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.2.0)
V	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.2.0)
X	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.2.0)
T	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.2.0)
B	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.2.0)
A	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.2.0)
C	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.2.0)
G	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.2.0)
I	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.2.0)
M	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.2.0)
O	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.2.0)
Q	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.2.0)
S	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.2.0)
U	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.2.0)
W	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.2.0)
K	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.2.0)
E	1.10.490.20	Mainly Alpha	Orthogonal Bundle	Globin-like	Phycocyanins	CATH (4.2.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B, D, F, H, J B, D, F, H, J, L, N, P, R, T, V, X	PF00502	Phycobilisome protein (Phycobilisome)	Phycobilisome protein		Domain
A, C, E, G, I A, C, E, G, I, K, M, O, Q, S, U, W	PF00502	Phycobilisome protein (Phycobilisome)	Phycobilisome protein		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B, D, F, H, J B, D, F, H, J, L, N, P, R, T, V, X	C-PHYCOCYANIN BETA CHAIN	-	photosynthesis metabolic process cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex membrane protein complex light-harvesting complex phycobilisome
A, C, E, G, I A, C, E, G, I, K, M, O, Q, S, U, W	C-PHYCOCYANIN ALPHA CHAIN	-	photosynthesis metabolic process cellular process	intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region intracellular anatomical structure plasma membrane-derived chromatophore membrane membrane plasma membrane intracellular membraneless organelle plasma membrane-derived chromatophore thylakoid membrane intracellular organelle cell periphery cellular anatomical structure plasma membrane-derived thylakoid membrane organelle membraneless organelle plasma membrane region bacterial thylakoid cytoplasm photosynthetic membrane thylakoid protein-containing complex membrane protein complex light-harvesting complex phycobilisome

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, D, F, H, J B, D, F, H, J, L, N, P, R, T, V, X	IPR038719	Phycobilisome, alpha/beta subunit superfamily	Homologous Superfamily
B, D, F, H, J B, D, F, H, J, L, N, P, R, T, V, X	IPR006247	Phycocyanin, beta subunit	Family
B, D, F, H, J B, D, F, H, J, L, N, P, R, T, V, X	IPR009050	Globin-like superfamily	Homologous Superfamily
B, D, F, H, J B, D, F, H, J, L, N, P, R, T, V, X	IPR012128	Phycobilisome, alpha/beta subunit	Family
A, C, E, G, I A, C, E, G, I, K, M, O, Q, S, U, W	IPR038719	Phycobilisome, alpha/beta subunit superfamily	Homologous Superfamily
A, C, E, G, I A, C, E, G, I, K, M, O, Q, S, U, W	IPR006246	Phycocyanin, alpha subunit	Family
A, C, E, G, I A, C, E, G, I, K, M, O, Q, S, U, W	IPR009050	Globin-like superfamily	Homologous Superfamily
A, C, E, G, I A, C, E, G, I, K, M, O, Q, S, U, W	IPR012128	Phycobilisome, alpha/beta subunit	Family

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
B, D, F, H, J B, D, F, H, J, L, N, P, R, T, V, X	MEN	Parent Component: ASN RESID: AA0070 PSI-MOD : N4-methyl-L-asparagine MOD:00079