1JJO | pdb_00001jjo

Crystal Structure of Mouse Neuroserpin (Cleaved form)

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
C [auth E]	d1jjo.1	Multi-domain proteins (alpha and beta)	Serpins	Serpins	Serpins	Neuroserpin	house mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
F	d1jjo.2	Multi-domain proteins (alpha and beta)	Serpins	Serpins	Serpins	Neuroserpin	house mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
B [auth C]	d1jjo.1	Multi-domain proteins (alpha and beta)	Serpins	Serpins	Serpins	Neuroserpin	house mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
E [auth D]	d1jjo.2	Multi-domain proteins (alpha and beta)	Serpins	Serpins	Serpins	Neuroserpin	house mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
A	d1jjo.1	Multi-domain proteins (alpha and beta)	Serpins	Serpins	Serpins	Neuroserpin	house mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
D [auth B]	d1jjo.2	Multi-domain proteins (alpha and beta)	Serpins	Serpins	Serpins	Neuroserpin	house mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C [auth E]		e1jjoE01	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F:	ECOD (v294.1)
F		e1jjoF01	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F:	ECOD (v294.1)
B [auth C]		e1jjoC01	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F:	ECOD (v294.1)
E [auth D]		e1jjoD01	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F:	ECOD (v294.1)
A		e1jjoA01	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F:	ECOD (v294.1)
D [auth B]		e1jjoB01	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F:	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B [auth C]	3.30.497.10	Alpha Beta	2-Layer Sandwich	Antithrombin	Chain I, domain 2	CATH (4.3.0)
B [auth C]	2.30.39.10	Mainly Beta	Roll	Alpha-1-antitrypsin	domain 1	CATH (4.3.0)
E [auth D]	3.30.497.10	Alpha Beta	2-Layer Sandwich	Antithrombin	Chain I, domain 2	CATH (4.3.0)
E [auth D]	2.30.39.10	Mainly Beta	Roll	Alpha-1-antitrypsin	domain 1	CATH (4.3.0)
A	1.10.287.580	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	Helix hairpin bin	CATH (4.3.0)
D [auth B]	1.10.287.580	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	Helix hairpin bin	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B [auth C], E [auth D]	PF00079	Serpin (serine protease inhibitor) (Serpin)	Serpin (serine protease inhibitor)	Structure is a multi-domain fold containing a bundle of helices and a beta sandwich.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C [auth E], F	NEUROSERPIN	enzyme regulator activity molecular function inhibitor activity peptidase regulator activity serine-type endopeptidase inhibitor activity molecular function regulator activity enzyme inhibitor activity peptidase inhibitor activity endopeptidase regulator activity endopeptidase inhibitor activity	regulation of neuron projection development multicellular organismal process regulation of cellular component organization regulation of cellular process positive regulation of cellular component organization cellular developmental process cell projection organization positive regulation of biological process cell development neuron projection development cellular component organization neurogenesis multicellular organism development neuron differentiation positive regulation of neuron projection development regulation of neuron projection development multicellular organismal process regulation of cellular component organization regulation of cellular process positive regulation of cellular component organization cellular developmental process cell projection organization positive regulation of biological process cell development neuron projection development cellular component organization neurogenesis multicellular organism development neuron differentiation positive regulation of neuron projection development cell differentiation anatomical structure development positive regulation of cell projection organization cellular component organization or biogenesis positive regulation of cellular process system development developmental process regulation of biological process plasma membrane bounded cell projection organization regulation of cell projection organization biological regulation nervous system development generation of neurons neuron development cellular process regulation of plasma membrane bounded cell projection organization	membrane-bounded organelle vesicle lumen intracellular anatomical structure membrane-enclosed lumen intracellular vesicle cytoplasmic vesicle lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen cytoplasmic vesicle organelle cytoplasm membrane-bounded organelle vesicle lumen intracellular anatomical structure membrane-enclosed lumen intracellular vesicle cytoplasmic vesicle lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen cytoplasmic vesicle organelle cytoplasm vesicle somatodendritic compartment cell body perikaryon neuronal cell body secretory granule lumen endomembrane system secretory granule secretory vesicle extracellular region extracellular space
B [auth C], E [auth D]	NEUROSERPIN	enzyme regulator activity molecular function inhibitor activity peptidase regulator activity serine-type endopeptidase inhibitor activity molecular function regulator activity enzyme inhibitor activity peptidase inhibitor activity endopeptidase regulator activity endopeptidase inhibitor activity	regulation of neuron projection development multicellular organismal process regulation of cellular component organization regulation of cellular process positive regulation of cellular component organization cellular developmental process cell projection organization positive regulation of biological process cell development neuron projection development cellular component organization neurogenesis multicellular organism development neuron differentiation positive regulation of neuron projection development regulation of neuron projection development multicellular organismal process regulation of cellular component organization regulation of cellular process positive regulation of cellular component organization cellular developmental process cell projection organization positive regulation of biological process cell development neuron projection development cellular component organization neurogenesis multicellular organism development neuron differentiation positive regulation of neuron projection development cell differentiation anatomical structure development positive regulation of cell projection organization cellular component organization or biogenesis positive regulation of cellular process system development developmental process regulation of biological process plasma membrane bounded cell projection organization regulation of cell projection organization biological regulation nervous system development generation of neurons neuron development cellular process regulation of plasma membrane bounded cell projection organization	membrane-bounded organelle vesicle lumen intracellular anatomical structure membrane-enclosed lumen intracellular vesicle cytoplasmic vesicle lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen cytoplasmic vesicle organelle cytoplasm membrane-bounded organelle vesicle lumen intracellular anatomical structure membrane-enclosed lumen intracellular vesicle cytoplasmic vesicle lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen cytoplasmic vesicle organelle cytoplasm vesicle somatodendritic compartment cell body perikaryon neuronal cell body secretory granule lumen endomembrane system secretory granule secretory vesicle extracellular region extracellular space
A, D [auth B]	NEUROSERPIN	enzyme regulator activity molecular function inhibitor activity peptidase regulator activity serine-type endopeptidase inhibitor activity molecular function regulator activity enzyme inhibitor activity peptidase inhibitor activity endopeptidase regulator activity endopeptidase inhibitor activity	regulation of neuron projection development multicellular organismal process regulation of cellular component organization regulation of cellular process positive regulation of cellular component organization cellular developmental process cell projection organization positive regulation of biological process cell development neuron projection development cellular component organization neurogenesis multicellular organism development neuron differentiation positive regulation of neuron projection development regulation of neuron projection development multicellular organismal process regulation of cellular component organization regulation of cellular process positive regulation of cellular component organization cellular developmental process cell projection organization positive regulation of biological process cell development neuron projection development cellular component organization neurogenesis multicellular organism development neuron differentiation positive regulation of neuron projection development cell differentiation anatomical structure development positive regulation of cell projection organization cellular component organization or biogenesis positive regulation of cellular process system development developmental process regulation of biological process plasma membrane bounded cell projection organization regulation of cell projection organization biological regulation nervous system development generation of neurons neuron development cellular process regulation of plasma membrane bounded cell projection organization	membrane-bounded organelle vesicle lumen intracellular anatomical structure membrane-enclosed lumen intracellular vesicle cytoplasmic vesicle lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen cytoplasmic vesicle organelle cytoplasm membrane-bounded organelle vesicle lumen intracellular anatomical structure membrane-enclosed lumen intracellular vesicle cytoplasmic vesicle lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle cellular anatomical structure organelle lumen cytoplasmic vesicle organelle cytoplasm vesicle somatodendritic compartment cell body perikaryon neuronal cell body secretory granule lumen endomembrane system secretory granule secretory vesicle extracellular region extracellular space

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C [auth E], F	IPR023795	Serpin, conserved site	Conserved Site
C [auth E], F	IPR000215	Serpin family	Family
C [auth E], F	IPR023796	Serpin domain	Domain
C [auth E], F	IPR042178	Serpin superfamily, domain 1	Homologous Superfamily
C [auth E], F	IPR042185	Serpin superfamily, domain 2	Homologous Superfamily
C [auth E], F	IPR036186	Serpin superfamily	Homologous Superfamily
B [auth C], E [auth D]	IPR023795	Serpin, conserved site	Conserved Site
B [auth C], E [auth D]	IPR000215	Serpin family	Family
B [auth C], E [auth D]	IPR023796	Serpin domain	Domain
B [auth C], E [auth D]	IPR042178	Serpin superfamily, domain 1	Homologous Superfamily
B [auth C], E [auth D]	IPR042185	Serpin superfamily, domain 2	Homologous Superfamily
B [auth C], E [auth D]	IPR036186	Serpin superfamily	Homologous Superfamily
A, D [auth B]	IPR023795	Serpin, conserved site	Conserved Site
A, D [auth B]	IPR000215	Serpin family	Family
A, D [auth B]	IPR023796	Serpin domain	Domain
A, D [auth B]	IPR042178	Serpin superfamily, domain 1	Homologous Superfamily
A, D [auth B]	IPR042185	Serpin superfamily, domain 2	Homologous Superfamily
A, D [auth B]	IPR036186	Serpin superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.