1MBB
OXIDOREDUCTASE
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | FAD-binding/transporter-associated domain-like | 8036705 | 3000913 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain | 8036714 | 3000935 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | FAD_binding_4 | e1mbbA1 | A: a+b complex topology | X: FAD-binding domain-like | H: FAD-binding domain (From Topology) | T: FAD-binding domain | F: FAD_binding_4 | ECOD (1.6) |
A | MurB_C | e1mbbA2 | A: a+b complex topology | X: Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain (From Topology) | H: Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain (From Topology) | T: Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain | F: MurB_C | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.90.78.10 | Alpha Beta | Alpha-Beta Complex | Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase | domain 1 | CATH (4.3.0) |
A | 3.30.43.10 | Alpha Beta | 2-Layer Sandwich | Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase | domain 2 | CATH (4.3.0) |
A | 3.30.465.10 | Alpha Beta | 2-Layer Sandwich | Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase | domain 3 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01565 | FAD binding domain (FAD_binding_4) | FAD binding domain | This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, call ... | Domain | |
PF02873 | UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain (MurB_C) | UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain | Members of this family are UDP-N-acetylenolpyruvoylglucosamine reductase enzymes EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR016167 | FAD-binding, type PCMH, subdomain 1 | Homologous Superfamily | |
IPR006094 | FAD linked oxidase, N-terminal | Domain | |
IPR003170 | UDP-N-acetylenolpyruvoylglucosamine reductase | Family | |
IPR016166 | FAD-binding domain, PCMH-type | Domain | |
IPR036635 | UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily | Homologous Superfamily | |
IPR036318 | FAD-binding, type PCMH-like superfamily | Homologous Superfamily | |
IPR016169 | FAD-binding, type PCMH, subdomain 2 | Homologous Superfamily | |
IPR011601 | UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal | Domain |
Structure Motif Annotation: Mechanism and Catalytic Site Atlas M-CSA Database Homepage
Chains | Enzyme Name | Description | Catalytic Residues |
---|---|---|---|
UDP-N-acetylenolpyruvylglucosamine reductase (MurB) M-CSA #353 | UDP-N-acetylenolpyruvylglucosamine reductase (MurB) reduces both E and Z isomers of enolbutyryl-UDP-GlcBAc analogs of the C3 enolpyruvate substate to UDP-methyl-N-acetylmuramic acid in the presence of NADPH. The overall product of this metabolic pathway, petidoglycan, is a biopolymer unique to Gram-positive and Gram-negative bacteria for which is essential for maintaining osmotic cell wall integrity. The absence of a homologue in eukaryotic cells makes MurB an attractive target for small molecule inhibitors with the potential to have broad antibacterial activity. The ability of MurB to catalyse the stereo-selective reduction of both E and Z isomers of the substrate is thought to result from the active site architecture restricting free rotation around the C2-C3 bond, and slowing the rate relative to reprotonation. Structural data show the functional groups thought to be involved in the hydride transfer to C3 and protonation at C2 of the enol-ether substrate are arranged anti relative to the enol-double bond. From this information, the stereochemical outcome was predicted to yield a 2R,3R-dideuterio product. This product was later identified using chemical synthetic analysis and comparative NMR. | EC: 1.1.1.158 (PDB Primary Data) EC: 1.3.1.98 (UniProt) |