1ML0
VIRAL CHEMOKINE BINDING PROTEIN M3 FROM MURINE GAMMAHERPESVIRUS68 IN COMPLEX WITH THE P8A VARIANT OF CC-CHEMOKINE MCP-1
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1ml0a_ | All beta proteins | Viral chemokine binding protein m3 | Viral chemokine binding protein m3 | Viral chemokine binding protein m3 | Viral chemokine binding protein m3 | Murine herpesvirus 68 (Murid gammaherpesvirus 4 ) [TaxId: 33708 ], | SCOPe (2.08) |
B [auth D] | d1ml0d_ | Alpha and beta proteins (a+b) | IL8-like | Interleukin 8-like chemokines | Interleukin 8-like chemokines | Monocyte chemoattractant protein-1 (MCP-1, MCAF) | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Viral chemokine binding protein m3 | 8043647 | 3001430 | SCOP2B (2022-06-29) |
B [auth D] | SCOP2B Superfamily | Interleukin 8-like chemokines | 8034307 | 3001955 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF09213 | e1ml0A2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Viral chemokine binding protein m3 (From Topology) | T: Viral chemokine binding protein m3 | F: PF09213 | ECOD (1.6) |
B [auth D] | PF00048 | e1ml0D1 | A: beta barrels | X: IL8-related (From Homology) | H: IL8-related | T: IL8 | F: PF00048 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.60.40.1330 | Mainly Beta | Sandwich | Immunoglobulin-like | CATH (4.3.0) | |
A | 2.60.40.1340 | Mainly Beta | Sandwich | Immunoglobulin-like | Chemokine-binding protein M3-like | CATH (4.3.0) |
B [auth D] | 2.40.50.40 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF09213 | M3 (M3) | M3 | Members of this family of viral chemokine binding proteins adopt a structure consisting of two different beta-sandwich domains of partial topological similarity to immunoglobulin-like folds. They bind with the CC-chemokine MCP-1, acting as cytokine d ... | Domain | |
B [auth D] | PF00048 | Small cytokines (intecrine/chemokine), interleukin-8 like (IL8) | Small cytokines (intecrine/chemokine), interleukin-8 like | Includes a number of secreted growth factors and interferons involved in mitogenic, chemotactic, and inflammatory activity. Structure contains two highly conserved disulfide bonds. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR015950 | Chemokine-binding M3, subdomain 1, viral | Homologous Superfamily | |
IPR015951 | Chemokine-binding M3, subdomain 2, viral | Homologous Superfamily | |
IPR015296 | Chemokine-binding M3, viral | Family | |
IPR036323 | Chemokine-binding M3 superfamily | Homologous Superfamily | |
B [auth D] | IPR001811 | Chemokine interleukin-8-like domain | Domain |
B [auth D] | IPR000827 | CC chemokine, conserved site | Conserved Site |
B [auth D] | IPR036048 | Chemokine interleukin-8-like superfamily | Homologous Superfamily |
B [auth D] | IPR039809 | Chemokine beta/gamma/delta | Family |