1MQ8 | pdb_00001mq8

Crystal structure of alphaL I domain in complex with ICAM-1

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
IMGT Antibody Annotation
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1mq8a1	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	C2 set domains	Intercellular cell adhesion molecule-1 (ICAM-1)	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d1mq8a2	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	I set domains	Intercellular adhesion molecule-1, ICAM-1	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C	d1mq8c1	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	C2 set domains	Intercellular cell adhesion molecule-1 (ICAM-1)	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C	d1mq8c2	All beta proteins	Immunoglobulin-like beta-sandwich	Immunoglobulin	I set domains	Intercellular adhesion molecule-1, ICAM-1	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d1mq8b_	Alpha and beta proteins (a/b)	vWA-like	vWA-like	Integrin A (or I) domain	Integrin CD11a/CD18 (Leukocyte function associated antigen-1, LFA-1)	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
D	d1mq8d_	Alpha and beta proteins (a/b)	vWA-like	vWA-like	Integrin A (or I) domain	Integrin CD11a/CD18 (Leukocyte function associated antigen-1, LFA-1)	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Immunoglobulin (Ig) domain-like	8054735	3000071	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Immunoglobulin (Ig) domain-like	8054755	3000071	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Immunoglobulin (Ig) domain-like	8054735	3000071	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Immunoglobulin (Ig) domain-like	8054755	3000071	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	vWA-like	8042676	3000832	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	vWA-like	8042676	3000832	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Copper-bind	e1mq8A1	A: a/b three-layered sandwiches	X: Phage tail fiber protein trimerization domain	H: beta-Prism I	T: beta-Prism I	F: Copper-bind	ECOD (v294.1)
C	Copper-bind	e1mq8C1	A: a/b three-layered sandwiches	X: Phage tail fiber protein trimerization domain	H: beta-Prism I	T: beta-Prism I	F: Copper-bind	ECOD (v294.1)
B	SNO, Peptidase_S51	e1mq8B1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: SNO, Peptidase_S51	ECOD (v294.1)
D	SNO, Peptidase_S51	e1mq8D1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: winged helix domain	F: SNO, Peptidase_S51	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
C	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
B	3.40.50.410	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	von Willebrand factor, type A domain	CATH (4.3.0)
D	3.40.50.410	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	von Willebrand factor, type A domain	CATH (4.3.0)

IMGT Antibody Annotation IMGT Database Homepage

Chain	Protein Name	Description	Organism Name	Gene Allele Name(s)	Domain Name(s)	Receptor Type	Receptor Description	Provenance Source
B, D	Integrin alpha-L	INTEGRIN-ALPHA-L	Homo sapiens (human)	ALPHA-L	I-LIKE-DOMAIN I-DOMAIN	RPI	(INTEGRIN-ALPHA-L)	IMGT (202611-0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, C	PF03921	Intercellular adhesion molecule (ICAM), N-terminal domain (ICAM_N)	Intercellular adhesion molecule (ICAM), N-terminal domain	ICAMs normally functions to promote intercellular adhesion and signalling. However, The N-terminal domain of the receptor binds to the rhinovirus 'canyon' surrounding the icosahedral 5-fold axes, during the viral attachment process [1]. This family ...	ICAMs normally functions to promote intercellular adhesion and signalling. However, The N-terminal domain of the receptor binds to the rhinovirus 'canyon' surrounding the icosahedral 5-fold axes, during the viral attachment process [1]. This family is a family that is part of the Ig superfamily and is therefore related to the family ig (Pfam:PF00047).	Domain
B, D	PF00092	von Willebrand factor type A domain (VWA)	von Willebrand factor type A domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, C	intercellular adhesion molecule-1	protein binding binding virus receptor activity exogenous protein binding molecular transducer activity signaling receptor activity molecular function activator activity molecular function regulator activity signaling receptor regulator activity receptor ligand activity signaling receptor activator activity cell adhesion molecule binding protein-containing complex binding integrin binding protein binding binding virus receptor activity exogenous protein binding molecular transducer activity signaling receptor activity molecular function activator activity molecular function regulator activity signaling receptor regulator activity receptor ligand activity signaling receptor activator activity cell adhesion molecule binding protein-containing complex binding integrin binding signaling receptor binding transmembrane signaling receptor activity	cell adhesion cell-cell adhesion cell-cell adhesion mediated by integrin cell adhesion mediated by integrin cellular process positive regulation of locomotion regulation of cell motility regulation of cellular process positive regulation of biological process positive regulation of cell migration positive regulation of cell motility regulation of cell migration cellular extravasation cell migration cell adhesion cell-cell adhesion cell-cell adhesion mediated by integrin cell adhesion mediated by integrin cellular process positive regulation of locomotion regulation of cell motility regulation of cellular process positive regulation of biological process positive regulation of cell migration positive regulation of cell motility regulation of cell migration cellular extravasation cell migration regulation of immune system process cell motility positive regulation of immune system process locomotion positive regulation of cellular process regulation of biological process regulation of leukocyte migration biological regulation positive regulation of leukocyte migration leukocyte migration immune system process regulation of locomotion positive regulation of cellular extravasation regulation of cellular extravasation cellular response to stimulus positive regulation of cell communication positive regulation of signal transduction response to stimulus signaling regulation of signal transduction intracellular signal transduction cell communication positive regulation of response to stimulus positive regulation of ERK1 and ERK2 cascade regulation of intracellular signal transduction intracellular signaling cassette signal transduction regulation of signaling positive regulation of MAPK cascade positive regulation of intracellular signal transduction regulation of MAPK cascade regulation of response to stimulus MAPK cascade regulation of cell communication ERK1 and ERK2 cascade regulation of ERK1 and ERK2 cascade positive regulation of signaling regulation of immune effector process regulation of leukocyte mediated cytotoxicity leukocyte mediated cytotoxicity immune effector process regulation of leukocyte mediated immunity leukocyte mediated immunity regulation of cell killing cell killing membrane to membrane docking membrane docking leukocyte adhesion to vascular endothelial cell leukocyte cell-cell adhesion homeostatic process response to oxygen-containing compound cellular response to glucose stimulus intracellular glucose homeostasis cellular response to oxygen-containing compound response to hexose cellular response to carbohydrate stimulus cellular response to chemical stimulus cellular homeostasis response to monosaccharide response to carbohydrate chemical homeostasis response to glucose response to chemical glucose homeostasis carbohydrate homeostasis cellular response to hexose stimulus intracellular chemical homeostasis cellular response to monosaccharide stimulus extrinsic apoptotic signaling pathway via death domain receptors negative regulation of signaling negative regulation of biological process regulation of programmed cell death extrinsic apoptotic signaling pathway negative regulation of cell communication negative regulation of extrinsic apoptotic signaling pathway negative regulation of apoptotic signaling pathway negative regulation of cellular process cell surface receptor signaling pathway negative regulation of response to stimulus negative regulation of programmed cell death regulation of apoptotic process negative regulation of extrinsic apoptotic signaling pathway via death domain receptors cell death negative regulation of signal transduction regulation of extrinsic apoptotic signaling pathway apoptotic signaling pathway negative regulation of apoptotic process regulation of extrinsic apoptotic signaling pathway via death domain receptors apoptotic process programmed cell death regulation of apoptotic signaling pathway heterophilic cell-cell adhesion virion attachment to host cell biological process involved in interspecies interaction between organisms receptor-mediated virion attachment to host cell adhesion of symbiont to host cell viral process viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction developmental process epithelium development endothelial cell differentiation cellular developmental process endothelium development cell development tissue development epithelial cell differentiation endothelial cell development epithelial cell development cell differentiation establishment of endothelial barrier anatomical structure development adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains lymphocyte mediated immunity T cell mediated immunity immune response adaptive immune response T cell antigen processing and presentation antigen processing and presentation negative regulation of endothelial cell apoptotic process endothelial cell apoptotic process regulation of endothelial cell apoptotic process regulation of cellular component organization plasma membrane bounded cell projection organization ruffle organization cell projection organization regulation of cell projection organization regulation of cell projection assembly plasma membrane bounded cell projection assembly regulation of cellular component biogenesis ruffle assembly cellular component organization cellular component biogenesis regulation of plasma membrane bounded cell projection assembly cellular component assembly regulation of ruffle assembly cellular component organization or biogenesis cell projection assembly regulation of plasma membrane bounded cell projection organization multicellular organismal process cell activation lymphocyte activation cell activation involved in immune response leukocyte activation T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell T cell activation involved in immune response T cell activation leukocyte activation involved in immune response lymphocyte activation involved in immune response T cell extravasation mononuclear cell migration lymphocyte migration T cell migration cellular response to nitrogen compound response to nitrogen compound cellular response to amyloid-beta response to amyloid-beta response to peptide response to cytokine response to leukemia inhibitory factor cellular response to cytokine stimulus cellular response to leukemia inhibitory factor	cellular anatomical structure anchoring junction cell junction focal adhesion cell-substrate junction cell periphery cell surface membrane plasma membrane external side of plasma membrane side of membrane extracellular exosome membrane-bounded organelle extracellular vesicle cellular anatomical structure anchoring junction cell junction focal adhesion cell-substrate junction cell periphery cell surface membrane plasma membrane external side of plasma membrane side of membrane extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle extracellular space vesicle extracellular membrane-bounded organelle membrane microdomain membrane raft extracellular matrix external encapsulating structure immunological synapse
B, D	Integrin alpha-L	molecular transducer activity signaling receptor activity cell adhesion molecule binding protein binding binding ICAM-3 receptor activity transmembrane signaling receptor activity protein-containing complex binding cation binding ion binding metal ion binding small molecule binding	cell adhesion cell-matrix adhesion cell-substrate adhesion cellular process T cell extravasation lymphocyte migration memory T cell extravasation leukocyte migration immune system process mononuclear cell migration cellular extravasation cell migration cell motility T cell migration cell adhesion cell-matrix adhesion cell-substrate adhesion cellular process T cell extravasation lymphocyte migration memory T cell extravasation leukocyte migration immune system process mononuclear cell migration cellular extravasation cell migration cell motility T cell migration localization import into cell transport phagocytosis endocytosis establishment of localization vesicle-mediated transport cellular response to stimulus regulation of biological process integrin-mediated signaling pathway regulation of cellular process cell surface receptor signaling pathway response to stimulus signaling biological regulation cell communication signal transduction heterophilic cell-cell adhesion cell-cell adhesion leukocyte cell-cell adhesion defense response response to stress inflammatory response cellular localization receptor clustering macromolecule localization intracellular protein localization localization within membrane protein localization to membrane multicellular organismal process immune response cell activation lymphocyte activation cell activation involved in immune response leukocyte activation immune effector process T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell T cell activation involved in immune response T cell activation leukocyte activation involved in immune response lymphocyte activation involved in immune response	membrane-bounded organelle intracellular anatomical structure membrane intracellular vesicle intracellular membrane-bounded organelle endomembrane system specific granule membrane intracellular organelle cytoplasmic vesicle membrane cellular anatomical structure bounding membrane of organelle vesicle membrane cytoplasmic vesicle organelle membrane-bounded organelle intracellular anatomical structure membrane intracellular vesicle intracellular membrane-bounded organelle endomembrane system specific granule membrane intracellular organelle cytoplasmic vesicle membrane cellular anatomical structure bounding membrane of organelle vesicle membrane cytoplasmic vesicle organelle secretory granule secretory vesicle cytoplasm vesicle organelle membrane secretory granule membrane specific granule extracellular exosome extracellular vesicle extracellular organelle extracellular region extracellular space extracellular membrane-bounded organelle cell surface protein-containing complex plasma membrane protein complex plasma membrane membrane protein complex receptor complex cell periphery integrin complex plasma membrane signaling receptor complex protein complex involved in cell adhesion integrin alphaL-beta2 complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, C	IPR036179	Immunoglobulin-like domain superfamily	Homologous Superfamily
A, C	IPR048679	Intercellular adhesion molecule 1/3/5, D2 domain	Domain
A, C	IPR003599	Immunoglobulin domain subtype	Domain
A, C	IPR047012	Intercellular adhesion molecule/vascular cell adhesion molecule	Family
A, C	IPR003988	Intercellular adhesion molecule	Domain
A, C	IPR003987	Intercellular adhesion molecule/vascular cell adhesion molecule, N-terminal	Domain
A, C	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A, C	IPR013768	Intercellular adhesion molecule, N-terminal	Domain
B, D	IPR013517	FG-GAP repeat	Repeat
B, D	IPR013519	Integrin alpha beta-propellor	Repeat
B, D	IPR000413	Integrin alpha chain	Family
B, D	IPR036465	von Willebrand factor A-like domain superfamily	Homologous Superfamily
B, D	IPR013649	Integrin alpha, first immunoglubulin-like domain	Domain
B, D	IPR028994	Integrin alpha, N-terminal	Homologous Superfamily
B, D	IPR002035	von Willebrand factor, type A	Domain
B, D	IPR048285	Integrin alpha, second immunoglobulin-like domain	Domain
B, D	IPR032695	Integrin domain superfamily	Homologous Superfamily
B, D	IPR018184	Integrin alpha chain, C-terminal cytoplasmic region, conserved site	Conserved Site

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, C	Pharos: P05362	ulcerative colitis asthma malaria diabetic retinopathy hypertensive disorder type 2 diabetes mellitus atherosclerosis inflammatory bowel disease leukostasis prostate cancer retinal disease Shock, Hemorrhagic multiple sclerosis uremia cardiovascular disease ulcerative colitis asthma malaria diabetic retinopathy hypertensive disorder type 2 diabetes mellitus atherosclerosis inflammatory bowel disease leukostasis prostate cancer retinal disease Shock, Hemorrhagic multiple sclerosis uremia cardiovascular disease obesity disorder cerebrovascular disorder peripheral nervous system disease coronary artery disease pleurisy acute lung injury middle cerebral artery infarction bronchiectasis urticaria nephrosis cholestasis peripheral neuropathy malignant colon neoplasm psoriasis respiratory syncytial virus infectious disease Behcet disease myocardial infarction brain ischemia interstitial cystitis non-small cell lung carcinoma juvenile idiopathic arthritis pancreatic ductal adenocarcinoma chronic mucocutaneous candidiasis congenital diaphragmatic hernia pilocytic astrocytoma cutaneous lupus erythematosus lung disease malignant ependymoma systemic lupus erythematosus Hashimoto thyroiditis atypical teratoid rhabdoid tumor benign colon neoplasm tuberculosis inborn carbohydrate metabolic disorder myocardial ischemia injury nasopharyngeal carcinoma invasive ductal breast carcinoma chronic obstructive pulmonary disease kidney disease lung cancer cystic fibrosis malignant glioma dry eye syndrome malignant pancreatic neoplasm arteriosclerosis disorder skin disease gastric carcinoma systemic sclerosis head and neck cancer autoimmune disease transitional cell carcinoma bipolar disorder ischemia reperfusion injury oral cavity neoplasm colonic neoplasm Crohn disease lung carcinoma primary biliary cholangitis malignant mesothelioma adenoma schizophrenia maturity-onset diabetes of the young arthritic joint disease glioblastoma thrombotic disease hematologic disease hypothyroidism myositis cancer
B, D	Pharos: P20701	ulcerative colitis acute promyelocytic leukemia Liver Cirrhosis, Experimental Behcet disease inflammatory bowel disease Sjogren syndrome chronic obstructive pulmonary disease dry eye syndrome interstitial cystitis lung carcinoma osteosarcoma spina bifida atopic eczema glioblastoma malignant glioma ulcerative colitis acute promyelocytic leukemia Liver Cirrhosis, Experimental Behcet disease inflammatory bowel disease Sjogren syndrome chronic obstructive pulmonary disease dry eye syndrome interstitial cystitis lung carcinoma osteosarcoma spina bifida atopic eczema glioblastoma malignant glioma periodontitis psoriasis tuberculosis cutaneous lupus erythematosus lung cancer non-small cell lung carcinoma pilocytic astrocytoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.