1NR7 | pdb_00001nr7

Crystal structure of apo bovine glutamate dehydrogenase


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ld1nr7l1 Alpha and beta proteins (a/b) NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains Aminoacid dehydrogenase-like, C-terminal domain Glutamate dehydrogenase (Bos taurus ) [TaxId: 9913 ], SCOPe (2.08)
Ld1nr7l2 Alpha and beta proteins (a/b) Aminoacid dehydrogenase-like, N-terminal domain Aminoacid dehydrogenase-like, N-terminal domain Aminoacid dehydrogenases Glutamate dehydrogenase (Bos taurus ) [TaxId: 9913 ], SCOPe (2.08)
Kd1nr7k1 Alpha and beta proteins (a/b) NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains Aminoacid dehydrogenase-like, C-terminal domain Glutamate dehydrogenase (Bos taurus ) [TaxId: 9913 ], SCOPe (2.08)
Kd1nr7k2 Alpha and beta proteins (a/b) Aminoacid dehydrogenase-like, N-terminal domain Aminoacid dehydrogenase-like, N-terminal domain Aminoacid dehydrogenases Glutamate dehydrogenase (Bos taurus ) [TaxId: 9913 ], SCOPe (2.08)
Jd1nr7j1 Alpha and beta proteins (a/b) NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains Aminoacid dehydrogenase-like, C-terminal domain Glutamate dehydrogenase (Bos taurus ) [TaxId: 9913 ], SCOPe (2.08)
Jd1nr7j2 Alpha and beta proteins (a/b) Aminoacid dehydrogenase-like, N-terminal domain Aminoacid dehydrogenase-like, N-terminal domain Aminoacid dehydrogenases Glutamate dehydrogenase (Bos taurus ) [TaxId: 9913 ], SCOPe (2.08)
Id1nr7i1 Alpha and beta proteins (a/b) NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains Aminoacid dehydrogenase-like, C-terminal domain Glutamate dehydrogenase (Bos taurus ) [TaxId: 9913 ], SCOPe (2.08)
Id1nr7i2 Alpha and beta proteins (a/b) Aminoacid dehydrogenase-like, N-terminal domain Aminoacid dehydrogenase-like, N-terminal domain Aminoacid dehydrogenases Glutamate dehydrogenase (Bos taurus ) [TaxId: 9913 ], SCOPe (2.08)
Hd1nr7h1 Alpha and beta proteins (a/b) NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains Aminoacid dehydrogenase-like, C-terminal domain Glutamate dehydrogenase (Bos taurus ) [TaxId: 9913 ], SCOPe (2.08)
Hd1nr7h2 Alpha and beta proteins (a/b) Aminoacid dehydrogenase-like, N-terminal domain Aminoacid dehydrogenase-like, N-terminal domain Aminoacid dehydrogenases Glutamate dehydrogenase (Bos taurus ) [TaxId: 9913 ], SCOPe (2.08)
Gd1nr7g1 Alpha and beta proteins (a/b) NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains Aminoacid dehydrogenase-like, C-terminal domain Glutamate dehydrogenase (Bos taurus ) [TaxId: 9913 ], SCOPe (2.08)
Gd1nr7g2 Alpha and beta proteins (a/b) Aminoacid dehydrogenase-like, N-terminal domain Aminoacid dehydrogenase-like, N-terminal domain Aminoacid dehydrogenases Glutamate dehydrogenase (Bos taurus ) [TaxId: 9913 ], SCOPe (2.08)
Fd1nr7f1 Alpha and beta proteins (a/b) NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains Aminoacid dehydrogenase-like, C-terminal domain Glutamate dehydrogenase (Bos taurus ) [TaxId: 9913 ], SCOPe (2.08)
Fd1nr7f2 Alpha and beta proteins (a/b) Aminoacid dehydrogenase-like, N-terminal domain Aminoacid dehydrogenase-like, N-terminal domain Aminoacid dehydrogenases Glutamate dehydrogenase (Bos taurus ) [TaxId: 9913 ], SCOPe (2.08)
Ed1nr7e1 Alpha and beta proteins (a/b) NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains Aminoacid dehydrogenase-like, C-terminal domain Glutamate dehydrogenase (Bos taurus ) [TaxId: 9913 ], SCOPe (2.08)
Ed1nr7e2 Alpha and beta proteins (a/b) Aminoacid dehydrogenase-like, N-terminal domain Aminoacid dehydrogenase-like, N-terminal domain Aminoacid dehydrogenases Glutamate dehydrogenase (Bos taurus ) [TaxId: 9913 ], SCOPe (2.08)
Dd1nr7d1 Alpha and beta proteins (a/b) NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains Aminoacid dehydrogenase-like, C-terminal domain Glutamate dehydrogenase (Bos taurus ) [TaxId: 9913 ], SCOPe (2.08)
Dd1nr7d2 Alpha and beta proteins (a/b) Aminoacid dehydrogenase-like, N-terminal domain Aminoacid dehydrogenase-like, N-terminal domain Aminoacid dehydrogenases Glutamate dehydrogenase (Bos taurus ) [TaxId: 9913 ], SCOPe (2.08)
Cd1nr7c1 Alpha and beta proteins (a/b) NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains Aminoacid dehydrogenase-like, C-terminal domain Glutamate dehydrogenase (Bos taurus ) [TaxId: 9913 ], SCOPe (2.08)
Cd1nr7c2 Alpha and beta proteins (a/b) Aminoacid dehydrogenase-like, N-terminal domain Aminoacid dehydrogenase-like, N-terminal domain Aminoacid dehydrogenases Glutamate dehydrogenase (Bos taurus ) [TaxId: 9913 ], SCOPe (2.08)
Bd1nr7b1 Alpha and beta proteins (a/b) NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains Aminoacid dehydrogenase-like, C-terminal domain Glutamate dehydrogenase (Bos taurus ) [TaxId: 9913 ], SCOPe (2.08)
Bd1nr7b2 Alpha and beta proteins (a/b) Aminoacid dehydrogenase-like, N-terminal domain Aminoacid dehydrogenase-like, N-terminal domain Aminoacid dehydrogenases Glutamate dehydrogenase (Bos taurus ) [TaxId: 9913 ], SCOPe (2.08)
Ad1nr7a1 Alpha and beta proteins (a/b) NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains Aminoacid dehydrogenase-like, C-terminal domain Glutamate dehydrogenase (Bos taurus ) [TaxId: 9913 ], SCOPe (2.08)
Ad1nr7a2 Alpha and beta proteins (a/b) Aminoacid dehydrogenase-like, N-terminal domain Aminoacid dehydrogenase-like, N-terminal domain Aminoacid dehydrogenases Glutamate dehydrogenase (Bos taurus ) [TaxId: 9913 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
LSCOP2B SuperfamilyMtdA-like 8054255 3000046 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyMtdA-like 8054255 3000046 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyMtdA-like 8054255 3000046 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyMtdA-like 8054255 3000046 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyMtdA-like 8054255 3000046 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyMtdA-like 8054255 3000046 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyMtdA-like 8054255 3000046 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyMtdA-like 8054255 3000046 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyMtdA-like 8054255 3000046 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyMtdA-like 8054255 3000046 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyMtdA-like 8054255 3000046 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyMtdA-like 8054255 3000046 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
LFAD_binding_3e1nr7L1 A: a/b three-layered sandwichesX: HTHH: HTHT: winged helix domainF: FAD_binding_3ECOD (v294.1)
LEPSP_synthasee1nr7L2 A: a/b three-layered sandwichesX: P-loop domains-likeH: ARM repeatT: ARM repeatF: EPSP_synthaseECOD (v294.1)
KFAD_binding_3e1nr7K1 A: a/b three-layered sandwichesX: HTHH: HTHT: winged helix domainF: FAD_binding_3ECOD (v294.1)
KEPSP_synthasee1nr7K2 A: a/b three-layered sandwichesX: P-loop domains-likeH: ARM repeatT: ARM repeatF: EPSP_synthaseECOD (v294.1)
JFAD_binding_3e1nr7J1 A: a/b three-layered sandwichesX: HTHH: HTHT: winged helix domainF: FAD_binding_3ECOD (v294.1)
JEPSP_synthasee1nr7J2 A: a/b three-layered sandwichesX: P-loop domains-likeH: ARM repeatT: ARM repeatF: EPSP_synthaseECOD (v294.1)
IFAD_binding_3e1nr7I1 A: a/b three-layered sandwichesX: HTHH: HTHT: winged helix domainF: FAD_binding_3ECOD (v294.1)
IEPSP_synthasee1nr7I2 A: a/b three-layered sandwichesX: P-loop domains-likeH: ARM repeatT: ARM repeatF: EPSP_synthaseECOD (v294.1)
HFAD_binding_3e1nr7H1 A: a/b three-layered sandwichesX: HTHH: HTHT: winged helix domainF: FAD_binding_3ECOD (v294.1)
HEPSP_synthasee1nr7H2 A: a/b three-layered sandwichesX: P-loop domains-likeH: ARM repeatT: ARM repeatF: EPSP_synthaseECOD (v294.1)
GFAD_binding_3e1nr7G1 A: a/b three-layered sandwichesX: HTHH: HTHT: winged helix domainF: FAD_binding_3ECOD (v294.1)
GEPSP_synthasee1nr7G2 A: a/b three-layered sandwichesX: P-loop domains-likeH: ARM repeatT: ARM repeatF: EPSP_synthaseECOD (v294.1)
FFAD_binding_3e1nr7F1 A: a/b three-layered sandwichesX: HTHH: HTHT: winged helix domainF: FAD_binding_3ECOD (v294.1)
FEPSP_synthasee1nr7F2 A: a/b three-layered sandwichesX: P-loop domains-likeH: ARM repeatT: ARM repeatF: EPSP_synthaseECOD (v294.1)
EFAD_binding_3e1nr7E1 A: a/b three-layered sandwichesX: HTHH: HTHT: winged helix domainF: FAD_binding_3ECOD (v294.1)
EEPSP_synthasee1nr7E2 A: a/b three-layered sandwichesX: P-loop domains-likeH: ARM repeatT: ARM repeatF: EPSP_synthaseECOD (v294.1)
DFAD_binding_3e1nr7D1 A: a/b three-layered sandwichesX: HTHH: HTHT: winged helix domainF: FAD_binding_3ECOD (v294.1)
DEPSP_synthasee1nr7D2 A: a/b three-layered sandwichesX: P-loop domains-likeH: ARM repeatT: ARM repeatF: EPSP_synthaseECOD (v294.1)
CFAD_binding_3e1nr7C1 A: a/b three-layered sandwichesX: HTHH: HTHT: winged helix domainF: FAD_binding_3ECOD (v294.1)
CEPSP_synthasee1nr7C2 A: a/b three-layered sandwichesX: P-loop domains-likeH: ARM repeatT: ARM repeatF: EPSP_synthaseECOD (v294.1)
BFAD_binding_3e1nr7B1 A: a/b three-layered sandwichesX: HTHH: HTHT: winged helix domainF: FAD_binding_3ECOD (v294.1)
BEPSP_synthasee1nr7B2 A: a/b three-layered sandwichesX: P-loop domains-likeH: ARM repeatT: ARM repeatF: EPSP_synthaseECOD (v294.1)
AFAD_binding_3e1nr7A1 A: a/b three-layered sandwichesX: HTHH: HTHT: winged helix domainF: FAD_binding_3ECOD (v294.1)
AEPSP_synthasee1nr7A2 A: a/b three-layered sandwichesX: P-loop domains-likeH: ARM repeatT: ARM repeatF: EPSP_synthaseECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
L3.40.50.10860 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Leucine Dehydrogenase, chain A, domain 1CATH (4.3.0)
L3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
L1.10.287.140 Mainly Alpha Orthogonal Bundle Helix Hairpins CATH (4.3.0)
K3.40.50.10860 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Leucine Dehydrogenase, chain A, domain 1CATH (4.3.0)
K3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
K1.10.287.140 Mainly Alpha Orthogonal Bundle Helix Hairpins CATH (4.3.0)
J3.40.50.10860 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Leucine Dehydrogenase, chain A, domain 1CATH (4.3.0)
J3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
J1.10.287.140 Mainly Alpha Orthogonal Bundle Helix Hairpins CATH (4.3.0)
I3.40.50.10860 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Leucine Dehydrogenase, chain A, domain 1CATH (4.3.0)
I3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
I1.10.287.140 Mainly Alpha Orthogonal Bundle Helix Hairpins CATH (4.3.0)
H3.40.50.10860 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Leucine Dehydrogenase, chain A, domain 1CATH (4.3.0)
H3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
H1.10.287.140 Mainly Alpha Orthogonal Bundle Helix Hairpins CATH (4.3.0)
G3.40.50.10860 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Leucine Dehydrogenase, chain A, domain 1CATH (4.3.0)
G3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
G1.10.287.140 Mainly Alpha Orthogonal Bundle Helix Hairpins CATH (4.3.0)
F3.40.50.10860 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Leucine Dehydrogenase, chain A, domain 1CATH (4.3.0)
F3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
F1.10.287.140 Mainly Alpha Orthogonal Bundle Helix Hairpins CATH (4.3.0)
E3.40.50.10860 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Leucine Dehydrogenase, chain A, domain 1CATH (4.3.0)
E3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
E1.10.287.140 Mainly Alpha Orthogonal Bundle Helix Hairpins CATH (4.3.0)
D3.40.50.10860 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Leucine Dehydrogenase, chain A, domain 1CATH (4.3.0)
D3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
D1.10.287.140 Mainly Alpha Orthogonal Bundle Helix Hairpins CATH (4.3.0)
C3.40.50.10860 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Leucine Dehydrogenase, chain A, domain 1CATH (4.3.0)
C3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
C1.10.287.140 Mainly Alpha Orthogonal Bundle Helix Hairpins CATH (4.3.0)
B3.40.50.10860 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Leucine Dehydrogenase, chain A, domain 1CATH (4.3.0)
B3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
B1.10.287.140 Mainly Alpha Orthogonal Bundle Helix Hairpins CATH (4.3.0)
A3.40.50.10860 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Leucine Dehydrogenase, chain A, domain 1CATH (4.3.0)
A3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
A1.10.287.140 Mainly Alpha Orthogonal Bundle Helix Hairpins CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF02812Glu/Leu/Phe/Val dehydrogenase, dimerisation domain (ELFV_dehydrog_N)Glu/Leu/Phe/Val dehydrogenase, dimerisation domainDomain
A, B, C, D, E
PF00208Glutamate/Leucine/Phenylalanine/Valine dehydrogenase (ELFV_dehydrog)Glutamate/Leucine/Phenylalanine/Valine dehydrogenaseDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
Glutamate dehydrogenase 1