1NY1
CRYSTAL STRUCTURE OF B. SUBTILIS POLYSACCHARIDE DEACETYLASE NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET SR127.
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1ny1a_ | Alpha and beta proteins (a/b) | 7-stranded beta/alpha barrel | Glycoside hydrolase/deacetylase | NodB-like polysaccharide deacetylase | Probable polysaccharide deacetylase PdaA | (Bacillus subtilis ) [TaxId: 1423 ], | SCOPe (2.08) |
B | d1ny1b_ | Alpha and beta proteins (a/b) | 7-stranded beta/alpha barrel | Glycoside hydrolase/deacetylase | NodB-like polysaccharide deacetylase | Probable polysaccharide deacetylase PdaA | (Bacillus subtilis ) [TaxId: 1423 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | NodB-like | 8021344 | 4000448 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Glycoside hydrolase/deacetylase | 8033724 | 3001025 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | Glycoside hydrolase/deacetylase | 8033724 | 3001025 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Polysacc_deac_1 | e1ny1A1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: Glycoside hydrolase/deacetylase (From Topology) | T: Glycoside hydrolase/deacetylase | F: Polysacc_deac_1 | ECOD (1.6) |
B | Polysacc_deac_1 | e1ny1B1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: Glycoside hydrolase/deacetylase (From Topology) | T: Glycoside hydrolase/deacetylase | F: Polysacc_deac_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.20.20.370 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Glycoside hydrolase/deacetylase | CATH (4.3.0) |
B | 3.20.20.370 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Glycoside hydrolase/deacetylase | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01522 | Polysaccharide deacetylase (Polysacc_deac_1) | Polysaccharide deacetylase | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR011330 | Glycoside hydrolase/deacetylase, beta/alpha-barrel | Homologous Superfamily | |
IPR050248 | Polysaccharide deacetylase, ArnD subfamily | Family | |
IPR002509 | NodB homology domain | Domain | |
IPR014235 | Peptidoglycan-N-acetylmuramic acid deacetylase PdaA | Family |