1OJD | pdb_00001ojd

HUMAN MONOAMINE OXIDASE B IN COMPLEX WITH Lauryldimethylamine-N-oxide (LDAO)

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: mpstruc

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
J [auth L]	d1ojdl1	Alpha and beta proteins (a/b)	FAD/NAD(P)-binding domain	FAD/NAD(P)-binding domain	FAD-linked reductases, N-terminal domain	Monoamine oxidase B	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
J [auth L]	d1ojdl2	Alpha and beta proteins (a+b)	FAD-linked reductases, C-terminal domain	FAD-linked reductases, C-terminal domain	L-aminoacid/polyamine oxidase	Monoamine oxidase B	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
I	d1ojdi1	Alpha and beta proteins (a/b)	FAD/NAD(P)-binding domain	FAD/NAD(P)-binding domain	FAD-linked reductases, N-terminal domain	Monoamine oxidase B	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
I	d1ojdi2	Alpha and beta proteins (a+b)	FAD-linked reductases, C-terminal domain	FAD-linked reductases, C-terminal domain	L-aminoacid/polyamine oxidase	Monoamine oxidase B	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
H	d1ojdh1	Alpha and beta proteins (a/b)	FAD/NAD(P)-binding domain	FAD/NAD(P)-binding domain	FAD-linked reductases, N-terminal domain	Monoamine oxidase B	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
H	d1ojdh2	Alpha and beta proteins (a+b)	FAD-linked reductases, C-terminal domain	FAD-linked reductases, C-terminal domain	L-aminoacid/polyamine oxidase	Monoamine oxidase B	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
G	d1ojdg1	Alpha and beta proteins (a/b)	FAD/NAD(P)-binding domain	FAD/NAD(P)-binding domain	FAD-linked reductases, N-terminal domain	Monoamine oxidase B	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
G	d1ojdg2	Alpha and beta proteins (a+b)	FAD-linked reductases, C-terminal domain	FAD-linked reductases, C-terminal domain	L-aminoacid/polyamine oxidase	Monoamine oxidase B	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
F	d1ojdf1	Alpha and beta proteins (a/b)	FAD/NAD(P)-binding domain	FAD/NAD(P)-binding domain	FAD-linked reductases, N-terminal domain	Monoamine oxidase B	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
F	d1ojdf2	Alpha and beta proteins (a+b)	FAD-linked reductases, C-terminal domain	FAD-linked reductases, C-terminal domain	L-aminoacid/polyamine oxidase	Monoamine oxidase B	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
E	d1ojde1	Alpha and beta proteins (a/b)	FAD/NAD(P)-binding domain	FAD/NAD(P)-binding domain	FAD-linked reductases, N-terminal domain	Monoamine oxidase B	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
E	d1ojde2	Alpha and beta proteins (a+b)	FAD-linked reductases, C-terminal domain	FAD-linked reductases, C-terminal domain	L-aminoacid/polyamine oxidase	Monoamine oxidase B	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
D	d1ojdd1	Alpha and beta proteins (a/b)	FAD/NAD(P)-binding domain	FAD/NAD(P)-binding domain	FAD-linked reductases, N-terminal domain	Monoamine oxidase B	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
D	d1ojdd2	Alpha and beta proteins (a+b)	FAD-linked reductases, C-terminal domain	FAD-linked reductases, C-terminal domain	L-aminoacid/polyamine oxidase	Monoamine oxidase B	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C	d1ojdc1	Alpha and beta proteins (a/b)	FAD/NAD(P)-binding domain	FAD/NAD(P)-binding domain	FAD-linked reductases, N-terminal domain	Monoamine oxidase B	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C	d1ojdc2	Alpha and beta proteins (a+b)	FAD-linked reductases, C-terminal domain	FAD-linked reductases, C-terminal domain	L-aminoacid/polyamine oxidase	Monoamine oxidase B	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d1ojdb1	Alpha and beta proteins (a/b)	FAD/NAD(P)-binding domain	FAD/NAD(P)-binding domain	FAD-linked reductases, N-terminal domain	Monoamine oxidase B	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d1ojdb2	Alpha and beta proteins (a+b)	FAD-linked reductases, C-terminal domain	FAD-linked reductases, C-terminal domain	L-aminoacid/polyamine oxidase	Monoamine oxidase B	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d1ojda1	Alpha and beta proteins (a/b)	FAD/NAD(P)-binding domain	FAD/NAD(P)-binding domain	FAD-linked reductases, N-terminal domain	Monoamine oxidase B	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d1ojda2	Alpha and beta proteins (a+b)	FAD-linked reductases, C-terminal domain	FAD-linked reductases, C-terminal domain	L-aminoacid/polyamine oxidase	Monoamine oxidase B	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
J [auth L]	SCOP2B Superfamily	Flavoreductase-like	8001424	3000055	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Flavoreductase-like	8001424	3000055	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Flavoreductase-like	8001424	3000055	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Flavoreductase-like	8001424	3000055	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Flavoreductase-like	8001424	3000055	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Flavoreductase-like	8001424	3000055	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Flavoreductase-like	8001424	3000055	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Flavoreductase-like	8001424	3000055	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Flavoreductase-like	8001424	3000055	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Flavoreductase-like	8001424	3000055	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
J [auth L]	YceM-like_C	e1ojdL1	A: alpha bundles	X: EGF-like	H: LDL receptor-like module	T: LDL receptor-like module	F: YceM-like_C	ECOD (develop294)
J [auth L]	NAD_binding_8	e1ojdL2	A: alpha bundles	X: HTH	H: HTH	T: winged helix domain	F: NAD_binding_8	ECOD (develop294)
I	YceM-like_C	e1ojdI1	A: alpha bundles	X: EGF-like	H: LDL receptor-like module	T: LDL receptor-like module	F: YceM-like_C	ECOD (develop294)
I	NAD_binding_8	e1ojdI2	A: alpha bundles	X: HTH	H: HTH	T: winged helix domain	F: NAD_binding_8	ECOD (develop294)
H	YceM-like_C	e1ojdH1	A: alpha bundles	X: EGF-like	H: LDL receptor-like module	T: LDL receptor-like module	F: YceM-like_C	ECOD (develop294)
H	NAD_binding_8	e1ojdH2	A: alpha bundles	X: HTH	H: HTH	T: winged helix domain	F: NAD_binding_8	ECOD (develop294)
G	YceM-like_C	e1ojdG1	A: alpha bundles	X: EGF-like	H: LDL receptor-like module	T: LDL receptor-like module	F: YceM-like_C	ECOD (develop294)
G	NAD_binding_8	e1ojdG2	A: alpha bundles	X: HTH	H: HTH	T: winged helix domain	F: NAD_binding_8	ECOD (develop294)
F	YceM-like_C	e1ojdF1	A: alpha bundles	X: EGF-like	H: LDL receptor-like module	T: LDL receptor-like module	F: YceM-like_C	ECOD (develop294)
F	NAD_binding_8	e1ojdF2	A: alpha bundles	X: HTH	H: HTH	T: winged helix domain	F: NAD_binding_8	ECOD (develop294)
E	YceM-like_C	e1ojdE1	A: alpha bundles	X: EGF-like	H: LDL receptor-like module	T: LDL receptor-like module	F: YceM-like_C	ECOD (develop294)
E	NAD_binding_8	e1ojdE2	A: alpha bundles	X: HTH	H: HTH	T: winged helix domain	F: NAD_binding_8	ECOD (develop294)
D	YceM-like_C	e1ojdD1	A: alpha bundles	X: EGF-like	H: LDL receptor-like module	T: LDL receptor-like module	F: YceM-like_C	ECOD (develop294)
D	NAD_binding_8	e1ojdD2	A: alpha bundles	X: HTH	H: HTH	T: winged helix domain	F: NAD_binding_8	ECOD (develop294)
C	YceM-like_C	e1ojdC1	A: alpha bundles	X: EGF-like	H: LDL receptor-like module	T: LDL receptor-like module	F: YceM-like_C	ECOD (develop294)
C	NAD_binding_8	e1ojdC2	A: alpha bundles	X: HTH	H: HTH	T: winged helix domain	F: NAD_binding_8	ECOD (develop294)
B	YceM-like_C	e1ojdB1	A: alpha bundles	X: EGF-like	H: LDL receptor-like module	T: LDL receptor-like module	F: YceM-like_C	ECOD (develop294)
B	NAD_binding_8	e1ojdB2	A: alpha bundles	X: HTH	H: HTH	T: winged helix domain	F: NAD_binding_8	ECOD (develop294)
A	YceM-like_C	e1ojdA1	A: alpha bundles	X: EGF-like	H: LDL receptor-like module	T: LDL receptor-like module	F: YceM-like_C	ECOD (develop294)
A	NAD_binding_8	e1ojdA2	A: alpha bundles	X: HTH	H: HTH	T: winged helix domain	F: NAD_binding_8	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
J [auth L]	3.50.50.60	Alpha Beta	3-Layer(bba) Sandwich	FAD/NAD(P)-binding domain	FAD/NAD(P)-binding domain	CATH (4.3.0)
J [auth L]	3.90.660.10	Alpha Beta	Alpha-Beta Complex	Polyamine Oxidase	Chain A, domain 2	CATH (4.3.0)
J [auth L]	1.10.405.10	Mainly Alpha	Orthogonal Bundle	Guanine Nucleotide Dissociation Inhibitor	domain 1	CATH (4.3.0)
I	3.50.50.60	Alpha Beta	3-Layer(bba) Sandwich	FAD/NAD(P)-binding domain	FAD/NAD(P)-binding domain	CATH (4.3.0)
I	3.90.660.10	Alpha Beta	Alpha-Beta Complex	Polyamine Oxidase	Chain A, domain 2	CATH (4.3.0)
I	1.10.405.10	Mainly Alpha	Orthogonal Bundle	Guanine Nucleotide Dissociation Inhibitor	domain 1	CATH (4.3.0)
H	3.50.50.60	Alpha Beta	3-Layer(bba) Sandwich	FAD/NAD(P)-binding domain	FAD/NAD(P)-binding domain	CATH (4.3.0)
H	3.90.660.10	Alpha Beta	Alpha-Beta Complex	Polyamine Oxidase	Chain A, domain 2	CATH (4.3.0)
H	1.10.405.10	Mainly Alpha	Orthogonal Bundle	Guanine Nucleotide Dissociation Inhibitor	domain 1	CATH (4.3.0)
G	3.50.50.60	Alpha Beta	3-Layer(bba) Sandwich	FAD/NAD(P)-binding domain	FAD/NAD(P)-binding domain	CATH (4.3.0)
G	3.90.660.10	Alpha Beta	Alpha-Beta Complex	Polyamine Oxidase	Chain A, domain 2	CATH (4.3.0)
G	1.10.405.10	Mainly Alpha	Orthogonal Bundle	Guanine Nucleotide Dissociation Inhibitor	domain 1	CATH (4.3.0)
F	3.50.50.60	Alpha Beta	3-Layer(bba) Sandwich	FAD/NAD(P)-binding domain	FAD/NAD(P)-binding domain	CATH (4.3.0)
F	3.90.660.10	Alpha Beta	Alpha-Beta Complex	Polyamine Oxidase	Chain A, domain 2	CATH (4.3.0)
F	1.10.405.10	Mainly Alpha	Orthogonal Bundle	Guanine Nucleotide Dissociation Inhibitor	domain 1	CATH (4.3.0)
E	3.50.50.60	Alpha Beta	3-Layer(bba) Sandwich	FAD/NAD(P)-binding domain	FAD/NAD(P)-binding domain	CATH (4.3.0)
E	3.90.660.10	Alpha Beta	Alpha-Beta Complex	Polyamine Oxidase	Chain A, domain 2	CATH (4.3.0)
E	1.10.405.10	Mainly Alpha	Orthogonal Bundle	Guanine Nucleotide Dissociation Inhibitor	domain 1	CATH (4.3.0)
D	3.50.50.60	Alpha Beta	3-Layer(bba) Sandwich	FAD/NAD(P)-binding domain	FAD/NAD(P)-binding domain	CATH (4.3.0)
D	3.90.660.10	Alpha Beta	Alpha-Beta Complex	Polyamine Oxidase	Chain A, domain 2	CATH (4.3.0)
D	1.10.405.10	Mainly Alpha	Orthogonal Bundle	Guanine Nucleotide Dissociation Inhibitor	domain 1	CATH (4.3.0)
C	3.50.50.60	Alpha Beta	3-Layer(bba) Sandwich	FAD/NAD(P)-binding domain	FAD/NAD(P)-binding domain	CATH (4.3.0)
C	3.90.660.10	Alpha Beta	Alpha-Beta Complex	Polyamine Oxidase	Chain A, domain 2	CATH (4.3.0)
C	1.10.405.10	Mainly Alpha	Orthogonal Bundle	Guanine Nucleotide Dissociation Inhibitor	domain 1	CATH (4.3.0)
B	3.50.50.60	Alpha Beta	3-Layer(bba) Sandwich	FAD/NAD(P)-binding domain	FAD/NAD(P)-binding domain	CATH (4.3.0)
B	3.90.660.10	Alpha Beta	Alpha-Beta Complex	Polyamine Oxidase	Chain A, domain 2	CATH (4.3.0)
B	1.10.405.10	Mainly Alpha	Orthogonal Bundle	Guanine Nucleotide Dissociation Inhibitor	domain 1	CATH (4.3.0)
A	3.50.50.60	Alpha Beta	3-Layer(bba) Sandwich	FAD/NAD(P)-binding domain	FAD/NAD(P)-binding domain	CATH (4.3.0)
A	3.90.660.10	Alpha Beta	Alpha-Beta Complex	Polyamine Oxidase	Chain A, domain 2	CATH (4.3.0)
A	1.10.405.10	Mainly Alpha	Orthogonal Bundle	Guanine Nucleotide Dissociation Inhibitor	domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J [auth L]	PF01593	Flavin containing amine oxidoreductase (Amino_oxidase)	Flavin containing amine oxidoreductase	This family consists of various amine oxidases, including maze polyamine oxidase (PAO) [1] and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene ...	This family consists of various amine oxidases, including maze polyamine oxidase (PAO) [1] and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines [2]. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium [3]. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines [1]. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J [auth L]	AMINE OXIDASE [FLAVIN-CONTAINING] B	monoamine oxidase activity oxidoreductase activity, acting on the CH-NH2 group of donors oxidoreductase activity oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor catalytic activity flavin adenine dinucleotide binding binding nucleoside phosphate binding ion binding anion binding nucleotide binding heterocyclic compound binding small molecule binding primary methylamine oxidase activity monoamine oxidase activity oxidoreductase activity, acting on the CH-NH2 group of donors oxidoreductase activity oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor catalytic activity flavin adenine dinucleotide binding binding nucleoside phosphate binding ion binding anion binding nucleotide binding heterocyclic compound binding small molecule binding primary methylamine oxidase activity electron transfer activity	developmental process multicellular organismal process head development animal organ development brain development nervous system development substantia nigra development multicellular organism development central nervous system development midbrain development anatomical structure development neural nucleus development system development reactive oxygen species biosynthetic process developmental process multicellular organismal process head development animal organ development brain development nervous system development substantia nigra development multicellular organism development central nervous system development midbrain development anatomical structure development neural nucleus development system development reactive oxygen species biosynthetic process biosynthetic process reactive oxygen species metabolic process hydrogen peroxide metabolic process metabolic process cellular process hydrogen peroxide biosynthetic process catecholamine catabolic process catabolic process catechol-containing compound catabolic process dopamine metabolic process catechol-containing compound metabolic process biogenic amine catabolic process phenol-containing compound catabolic process amine metabolic process dopamine catabolic process catecholamine metabolic process phenol-containing compound metabolic process biogenic amine metabolic process amine catabolic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle organelle envelope mitochondrial envelope mitochondrial membrane membrane organelle outer membrane bounding membrane of organelle membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle organelle envelope mitochondrial envelope mitochondrial membrane membrane organelle outer membrane bounding membrane of organelle mitochondrial outer membrane outer membrane organelle membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J [auth L]	IPR002937	Amine oxidase	Domain
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J [auth L]	IPR036188	FAD/NAD(P)-binding domain superfamily	Homologous Superfamily
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J [auth L]	IPR050703	Flavin Monoamine Oxidase	Family
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J [auth L]	IPR001613	Flavin amine oxidase	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J [auth L]	Pharos: P27338	Alzheimer disease Parkinson disease Huntington disease malignant colon neoplasm megaloblastic anemia hepatic encephalopathy major depressive disorder hepatic coma endometriosis Pheochromocytoma schizophrenia depressive disorder extra-adrenal sympathetic paraganglioma pilocytic astrocytoma head and neck cancer Alzheimer disease Parkinson disease Huntington disease malignant colon neoplasm megaloblastic anemia hepatic encephalopathy major depressive disorder hepatic coma endometriosis Pheochromocytoma schizophrenia depressive disorder extra-adrenal sympathetic paraganglioma pilocytic astrocytoma head and neck cancer hypertensive disorder intellectual disability large cell medulloblastoma autism medulloblastoma bipolar disorder colonic neoplasm pancreatic ductal adenocarcinoma phaeochromocytoma pituitary cancer psoriasis sinusitis adrenal gland pheochromocytoma invasive ductal breast carcinoma lung adenocarcinoma breast cancer non-small cell lung carcinoma cystic fibrosis toxic encephalopathy hypotensive disorder juvenile Huntington disease lung cancer atypical teratoid rhabdoid tumor malignant ependymoma benign colon neoplasm breast carcinoma ovarian cancer