1OOP | pdb_00001oop

The Crystal Structure of Swine Vesicular Disease Virus


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilyPicornaviridae-like VP (VP1, VP2, VP3 and VP4) 8021807 4003466 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyPositive stranded ssRNA viruses-like 8034187 3000918 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BBeta-Caspe1oopB1 A: a/b three-layered sandwichesX: Glycosyl hydrolase domain-likeH: Glycoside hydrolase family 127 middle domain-relatedT: Glycoside hydrolase family 127 middle domain-relatedF: Beta-CaspECOD (v294.1)
CTNFe1oopC1 A: a/b three-layered sandwichesX: Phage tail fiber protein trimerization domainH: beta-Prism IT: beta-Prism IF: TNFECOD (v294.1)
DYadA_stalke1oopD1 A: a/b three-layered sandwichesX: SMI1/KNR4-likeH: SMI1/KNR4-likeT: SMI1/KNR4-likeF: YadA_stalkECOD (v294.1)
ARhve1oopA1 A: a/b three-layered sandwichesX: Phage tail fiber protein trimerization domainH: beta-Prism IT: beta-Prism IF: RhvECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
C2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
D4.10.80.10 Few Secondary Structures Irregular Rhinovirus 14, subunit 4 Picornavirus coat protein VP4CATH (4.3.0)
A2.60.120.20 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Coat protein VP2
Coat protein VP3
Coat protein VP4
Coat protein VP1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
IPR002527Picornavirus 2B proteinDomain
IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
IPR036988Picornavirus coat protein VP4 superfamilyHomologous Superfamily
IPR003593AAA+ ATPase domainDomain
IPR003138Picornavirus coat protein VP4Family
IPR000199Peptidase C3A/C3B, picornaviralDomain
IPR001676Picornavirus capsidDomain
IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR000081Peptidase C3, picornavirus core protein 2ADomain
IPR043504Peptidase_S1_PA_chymotrypsinUnknown
IPR029053Viral coat protein subunitHomologous Superfamily
IPR009003Peptidase S1, PA clanHomologous Superfamily
IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
IPR044067Picornavirales 3C/3C-like protease domainDomain
IPR033703Picornavirus/Calicivirus coat proteinDomain
IPR014838Poliovirus 3A protein-likeDomain
IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
IPR007094RNA-directed RNA polymerase, catalytic domainDomain
IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
IPR002527Picornavirus 2B proteinDomain
IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
IPR036988Picornavirus coat protein VP4 superfamilyHomologous Superfamily
IPR003593AAA+ ATPase domainDomain
IPR003138Picornavirus coat protein VP4Family
IPR000199Peptidase C3A/C3B, picornaviralDomain
IPR001676Picornavirus capsidDomain
IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR000081Peptidase C3, picornavirus core protein 2ADomain
IPR043504Peptidase_S1_PA_chymotrypsinUnknown
IPR029053Viral coat protein subunitHomologous Superfamily
IPR009003Peptidase S1, PA clanHomologous Superfamily
IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
IPR044067Picornavirales 3C/3C-like protease domainDomain
IPR033703Picornavirus/Calicivirus coat proteinDomain
IPR014838Poliovirus 3A protein-likeDomain
IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
IPR007094RNA-directed RNA polymerase, catalytic domainDomain
IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
IPR002527Picornavirus 2B proteinDomain
IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
IPR036988Picornavirus coat protein VP4 superfamilyHomologous Superfamily
IPR003593AAA+ ATPase domainDomain
IPR003138Picornavirus coat protein VP4Family
IPR000199Peptidase C3A/C3B, picornaviralDomain
IPR001676Picornavirus capsidDomain
IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR000081Peptidase C3, picornavirus core protein 2ADomain
IPR043504Peptidase_S1_PA_chymotrypsinUnknown
IPR029053Viral coat protein subunitHomologous Superfamily
IPR009003Peptidase S1, PA clanHomologous Superfamily
IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
IPR044067Picornavirales 3C/3C-like protease domainDomain
IPR033703Picornavirus/Calicivirus coat proteinDomain
IPR014838Poliovirus 3A protein-likeDomain
IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
IPR007094RNA-directed RNA polymerase, catalytic domainDomain
IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
IPR002527Picornavirus 2B proteinDomain
IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
IPR036988Picornavirus coat protein VP4 superfamilyHomologous Superfamily
IPR003593AAA+ ATPase domainDomain
IPR003138Picornavirus coat protein VP4Family
IPR000199Peptidase C3A/C3B, picornaviralDomain
IPR001676Picornavirus capsidDomain
IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR000081Peptidase C3, picornavirus core protein 2ADomain
IPR043504Peptidase_S1_PA_chymotrypsinUnknown
IPR029053Viral coat protein subunitHomologous Superfamily
IPR009003Peptidase S1, PA clanHomologous Superfamily
IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
IPR044067Picornavirales 3C/3C-like protease domainDomain
IPR033703Picornavirus/Calicivirus coat proteinDomain
IPR014838Poliovirus 3A protein-likeDomain
IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
IPR007094RNA-directed RNA polymerase, catalytic domainDomain
IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain