Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad1pkla1 All beta proteins PK beta-barrel domain-like PK beta-barrel domain-like Pyruvate kinase beta-barrel domain Pyruvate kinase (PK) (Leishmania mexicana ) [TaxId: 5665 ], SCOPe (2.08)
Ad1pkla2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel Phosphoenolpyruvate/pyruvate domain Pyruvate kinase Pyruvate kinase, N-terminal domain (Leishmania mexicana ) [TaxId: 5665 ], SCOPe (2.08)
Ad1pkla3 Alpha and beta proteins (a/b) Pyruvate kinase C-terminal domain-like PK C-terminal domain-like Pyruvate kinase, C-terminal domain Pyruvate kinase, C-terminal domain (Leishmania mexicana ) [TaxId: 5665 ], SCOPe (2.08)
Bd1pklb1 All beta proteins PK beta-barrel domain-like PK beta-barrel domain-like Pyruvate kinase beta-barrel domain Pyruvate kinase (PK) (Leishmania mexicana ) [TaxId: 5665 ], SCOPe (2.08)
Bd1pklb2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel Phosphoenolpyruvate/pyruvate domain Pyruvate kinase Pyruvate kinase, N-terminal domain (Leishmania mexicana ) [TaxId: 5665 ], SCOPe (2.08)
Bd1pklb3 Alpha and beta proteins (a/b) Pyruvate kinase C-terminal domain-like PK C-terminal domain-like Pyruvate kinase, C-terminal domain Pyruvate kinase, C-terminal domain (Leishmania mexicana ) [TaxId: 5665 ], SCOPe (2.08)
Ed1pkle1 All beta proteins PK beta-barrel domain-like PK beta-barrel domain-like Pyruvate kinase beta-barrel domain Pyruvate kinase (PK) (Leishmania mexicana ) [TaxId: 5665 ], SCOPe (2.08)
Ed1pkle2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel Phosphoenolpyruvate/pyruvate domain Pyruvate kinase Pyruvate kinase, N-terminal domain (Leishmania mexicana ) [TaxId: 5665 ], SCOPe (2.08)
Ed1pkle3 Alpha and beta proteins (a/b) Pyruvate kinase C-terminal domain-like PK C-terminal domain-like Pyruvate kinase, C-terminal domain Pyruvate kinase, C-terminal domain (Leishmania mexicana ) [TaxId: 5665 ], SCOPe (2.08)
Fd1pklf1 All beta proteins PK beta-barrel domain-like PK beta-barrel domain-like Pyruvate kinase beta-barrel domain Pyruvate kinase (PK) (Leishmania mexicana ) [TaxId: 5665 ], SCOPe (2.08)
Fd1pklf2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel Phosphoenolpyruvate/pyruvate domain Pyruvate kinase Pyruvate kinase, N-terminal domain (Leishmania mexicana ) [TaxId: 5665 ], SCOPe (2.08)
Fd1pklf3 Alpha and beta proteins (a/b) Pyruvate kinase C-terminal domain-like PK C-terminal domain-like Pyruvate kinase, C-terminal domain Pyruvate kinase, C-terminal domain (Leishmania mexicana ) [TaxId: 5665 ], SCOPe (2.08)
G [auth H]d1pklh1 All beta proteins PK beta-barrel domain-like PK beta-barrel domain-like Pyruvate kinase beta-barrel domain Pyruvate kinase (PK) (Leishmania mexicana ) [TaxId: 5665 ], SCOPe (2.08)
G [auth H]d1pklh2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel Phosphoenolpyruvate/pyruvate domain Pyruvate kinase Pyruvate kinase, N-terminal domain (Leishmania mexicana ) [TaxId: 5665 ], SCOPe (2.08)
G [auth H]d1pklh3 Alpha and beta proteins (a/b) Pyruvate kinase C-terminal domain-like PK C-terminal domain-like Pyruvate kinase, C-terminal domain Pyruvate kinase, C-terminal domain (Leishmania mexicana ) [TaxId: 5665 ], SCOPe (2.08)
Cd1pklc1 All beta proteins PK beta-barrel domain-like PK beta-barrel domain-like Pyruvate kinase beta-barrel domain Pyruvate kinase (PK) (Leishmania mexicana ) [TaxId: 5665 ], SCOPe (2.08)
Cd1pklc2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel Phosphoenolpyruvate/pyruvate domain Pyruvate kinase Pyruvate kinase, N-terminal domain (Leishmania mexicana ) [TaxId: 5665 ], SCOPe (2.08)
Cd1pklc3 Alpha and beta proteins (a/b) Pyruvate kinase C-terminal domain-like PK C-terminal domain-like Pyruvate kinase, C-terminal domain Pyruvate kinase, C-terminal domain (Leishmania mexicana ) [TaxId: 5665 ], SCOPe (2.08)
Dd1pkld1 All beta proteins PK beta-barrel domain-like PK beta-barrel domain-like Pyruvate kinase beta-barrel domain Pyruvate kinase (PK) (Leishmania mexicana ) [TaxId: 5665 ], SCOPe (2.08)
Dd1pkld2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel Phosphoenolpyruvate/pyruvate domain Pyruvate kinase Pyruvate kinase, N-terminal domain (Leishmania mexicana ) [TaxId: 5665 ], SCOPe (2.08)
Dd1pkld3 Alpha and beta proteins (a/b) Pyruvate kinase C-terminal domain-like PK C-terminal domain-like Pyruvate kinase, C-terminal domain Pyruvate kinase, C-terminal domain (Leishmania mexicana ) [TaxId: 5665 ], SCOPe (2.08)
H [auth G]d1pklg1 All beta proteins PK beta-barrel domain-like PK beta-barrel domain-like Pyruvate kinase beta-barrel domain Pyruvate kinase (PK) (Leishmania mexicana ) [TaxId: 5665 ], SCOPe (2.08)
H [auth G]d1pklg2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel Phosphoenolpyruvate/pyruvate domain Pyruvate kinase Pyruvate kinase, N-terminal domain (Leishmania mexicana ) [TaxId: 5665 ], SCOPe (2.08)
H [auth G]d1pklg3 Alpha and beta proteins (a/b) Pyruvate kinase C-terminal domain-like PK C-terminal domain-like Pyruvate kinase, C-terminal domain Pyruvate kinase, C-terminal domain (Leishmania mexicana ) [TaxId: 5665 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyPhosphoenolpyruvate/pyruvate domain 8043649 3000510 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyPK C-terminal domain-like 8044406 3000442 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyPhosphoenolpyruvate/pyruvate domain 8043649 3000510 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyPK beta-barrel domain-like 8042557 3001296 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyPhosphoenolpyruvate/pyruvate domain 8043649 3000510 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyPhosphoenolpyruvate/pyruvate domain 8043649 3000510 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyPK C-terminal domain-like 8044406 3000442 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyPK beta-barrel domain-like 8042557 3001296 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyPK C-terminal domain-like 8044406 3000442 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyPhosphoenolpyruvate/pyruvate domain 8043649 3000510 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyPK beta-barrel domain-like 8042557 3001296 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyPhosphoenolpyruvate/pyruvate domain 8043649 3000510 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyPhosphoenolpyruvate/pyruvate domain 8043649 3000510 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyPK beta-barrel domain-like 8042557 3001296 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyPK C-terminal domain-like 8044406 3000442 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyPhosphoenolpyruvate/pyruvate domain 8043649 3000510 SCOP2B (2022-06-29)
G [auth H]SCOP2B SuperfamilyPK beta-barrel domain-like 8042557 3001296 SCOP2B (2022-06-29)
G [auth H]SCOP2B SuperfamilyPK C-terminal domain-like 8044406 3000442 SCOP2B (2022-06-29)
G [auth H]SCOP2B SuperfamilyPhosphoenolpyruvate/pyruvate domain 8043649 3000510 SCOP2B (2022-06-29)
G [auth H]SCOP2B SuperfamilyPhosphoenolpyruvate/pyruvate domain 8043649 3000510 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyPK beta-barrel domain-like 8042557 3001296 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyPhosphoenolpyruvate/pyruvate domain 8043649 3000510 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyPK C-terminal domain-like 8044406 3000442 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyPhosphoenolpyruvate/pyruvate domain 8043649 3000510 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyPK beta-barrel domain-like 8042557 3001296 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyPhosphoenolpyruvate/pyruvate domain 8043649 3000510 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyPhosphoenolpyruvate/pyruvate domain 8043649 3000510 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyPK C-terminal domain-like 8044406 3000442 SCOP2B (2022-06-29)
H [auth G]SCOP2 FamilyPyruvate kinase beta-barrel domain 8030178 4002474 SCOP2 (2022-06-29)
H [auth G]SCOP2 FamilyPyruvate kinase 8031271 4003255 SCOP2 (2022-06-29)
H [auth G]SCOP2 FamilyPK C-terminal domain-like 8032028 4000500 SCOP2 (2022-06-29)
H [auth G]SCOP2 SuperfamilyPK beta-barrel domain-like 8042557 3001296 SCOP2 (2022-06-29)
H [auth G]SCOP2 SuperfamilyPhosphoenolpyruvate/pyruvate domain 8043649 3000510 SCOP2 (2022-06-29)
H [auth G]SCOP2 SuperfamilyPK C-terminal domain-like 8044406 3000442 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APK_2nde1pklA1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: PK beta-barrel domain-likeF: PK_2ndECOD (1.6)
APK_1ste1pklA2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: PK_1stECOD (1.6)
APK_Ce1pklA3 A: a/b three-layered sandwichesX: PK C-terminal domain-like (From Topology)H: PK C-terminal domain-like (From Topology)T: PK C-terminal domain-likeF: PK_CECOD (1.6)
BPK_2nde1pklB4 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: PK beta-barrel domain-likeF: PK_2ndECOD (1.6)
BPK_1ste1pklB2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: PK_1stECOD (1.6)
BPK_Ce1pklB1 A: a/b three-layered sandwichesX: PK C-terminal domain-like (From Topology)H: PK C-terminal domain-like (From Topology)T: PK C-terminal domain-likeF: PK_CECOD (1.6)
EPK_2nde1pklE4 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: PK beta-barrel domain-likeF: PK_2ndECOD (1.6)
EPK_1ste1pklE2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: PK_1stECOD (1.6)
EPK_Ce1pklE1 A: a/b three-layered sandwichesX: PK C-terminal domain-like (From Topology)H: PK C-terminal domain-like (From Topology)T: PK C-terminal domain-likeF: PK_CECOD (1.6)
FPK_2nde1pklF4 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: PK beta-barrel domain-likeF: PK_2ndECOD (1.6)
FPK_1ste1pklF2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: PK_1stECOD (1.6)
FPK_Ce1pklF1 A: a/b three-layered sandwichesX: PK C-terminal domain-like (From Topology)H: PK C-terminal domain-like (From Topology)T: PK C-terminal domain-likeF: PK_CECOD (1.6)
G [auth H]PK_2nde1pklH4 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: PK beta-barrel domain-likeF: PK_2ndECOD (1.6)
G [auth H]PK_1ste1pklH2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: PK_1stECOD (1.6)
G [auth H]PK_Ce1pklH1 A: a/b three-layered sandwichesX: PK C-terminal domain-like (From Topology)H: PK C-terminal domain-like (From Topology)T: PK C-terminal domain-likeF: PK_CECOD (1.6)
CPK_2nde1pklC4 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: PK beta-barrel domain-likeF: PK_2ndECOD (1.6)
CPK_1ste1pklC2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: PK_1stECOD (1.6)
CPK_Ce1pklC1 A: a/b three-layered sandwichesX: PK C-terminal domain-like (From Topology)H: PK C-terminal domain-like (From Topology)T: PK C-terminal domain-likeF: PK_CECOD (1.6)
DPK_2nde1pklD4 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: PK beta-barrel domain-likeF: PK_2ndECOD (1.6)
DPK_1ste1pklD2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: PK_1stECOD (1.6)
DPK_Ce1pklD1 A: a/b three-layered sandwichesX: PK C-terminal domain-like (From Topology)H: PK C-terminal domain-like (From Topology)T: PK C-terminal domain-likeF: PK_CECOD (1.6)
H [auth G]PK_2nde1pklG4 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: PK beta-barrel domain-likeF: PK_2ndECOD (1.6)
H [auth G]PK_1ste1pklG2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: PK_1stECOD (1.6)
H [auth G]PK_Ce1pklG1 A: a/b three-layered sandwichesX: PK C-terminal domain-like (From Topology)H: PK C-terminal domain-like (From Topology)T: PK C-terminal domain-likeF: PK_CECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.40.1380.20 Alpha Beta 3-Layer(aba) Sandwich Pyruvate Kinase Chain: A, domain 1CATH (4.3.0)
A3.20.20.60 Alpha Beta Alpha-Beta Barrel TIM Barrel Phosphoenolpyruvate-binding domainsCATH (4.3.0)
A2.40.33.10 Mainly Beta Beta Barrel M1 Pyruvate Kinase Domain 3CATH (4.3.0)
B3.40.1380.20 Alpha Beta 3-Layer(aba) Sandwich Pyruvate Kinase Chain: A, domain 1CATH (4.3.0)
B3.20.20.60 Alpha Beta Alpha-Beta Barrel TIM Barrel Phosphoenolpyruvate-binding domainsCATH (4.3.0)
B2.40.33.10 Mainly Beta Beta Barrel M1 Pyruvate Kinase Domain 3CATH (4.3.0)
E3.40.1380.20 Alpha Beta 3-Layer(aba) Sandwich Pyruvate Kinase Chain: A, domain 1CATH (4.3.0)
E3.20.20.60 Alpha Beta Alpha-Beta Barrel TIM Barrel Phosphoenolpyruvate-binding domainsCATH (4.3.0)
E2.40.33.10 Mainly Beta Beta Barrel M1 Pyruvate Kinase Domain 3CATH (4.3.0)
F3.40.1380.20 Alpha Beta 3-Layer(aba) Sandwich Pyruvate Kinase Chain: A, domain 1CATH (4.3.0)
F3.20.20.60 Alpha Beta Alpha-Beta Barrel TIM Barrel Phosphoenolpyruvate-binding domainsCATH (4.3.0)
F2.40.33.10 Mainly Beta Beta Barrel M1 Pyruvate Kinase Domain 3CATH (4.3.0)
G [auth H]3.40.1380.20 Alpha Beta 3-Layer(aba) Sandwich Pyruvate Kinase Chain: A, domain 1CATH (4.3.0)
G [auth H]3.20.20.60 Alpha Beta Alpha-Beta Barrel TIM Barrel Phosphoenolpyruvate-binding domainsCATH (4.3.0)
G [auth H]2.40.33.10 Mainly Beta Beta Barrel M1 Pyruvate Kinase Domain 3CATH (4.3.0)
C3.40.1380.20 Alpha Beta 3-Layer(aba) Sandwich Pyruvate Kinase Chain: A, domain 1CATH (4.3.0)
C3.20.20.60 Alpha Beta Alpha-Beta Barrel TIM Barrel Phosphoenolpyruvate-binding domainsCATH (4.3.0)
C2.40.33.10 Mainly Beta Beta Barrel M1 Pyruvate Kinase Domain 3CATH (4.3.0)
D3.40.1380.20 Alpha Beta 3-Layer(aba) Sandwich Pyruvate Kinase Chain: A, domain 1CATH (4.3.0)
D3.20.20.60 Alpha Beta Alpha-Beta Barrel TIM Barrel Phosphoenolpyruvate-binding domainsCATH (4.3.0)
D2.40.33.10 Mainly Beta Beta Barrel M1 Pyruvate Kinase Domain 3CATH (4.3.0)
H [auth G]3.40.1380.20 Alpha Beta 3-Layer(aba) Sandwich Pyruvate Kinase Chain: A, domain 1CATH (4.3.0)
H [auth G]3.20.20.60 Alpha Beta Alpha-Beta Barrel TIM Barrel Phosphoenolpyruvate-binding domainsCATH (4.3.0)
H [auth G]2.40.33.10 Mainly Beta Beta Barrel M1 Pyruvate Kinase Domain 3CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A,
B,
C,
D,
E,
PF02887Pyruvate kinase, alpha/beta domain (PK_C)Pyruvate kinase, alpha/beta domainPyruvate kinase catalyses the final step in glycolysis, the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP [1,2]. The structure of several pyruvate kinases from various organisms have been determined [2, ...Pyruvate kinase catalyses the final step in glycolysis, the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP [1,2]. The structure of several pyruvate kinases from various organisms have been determined [2, 3,4]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain (represented in this entry). This domain is at the C-terminal of pyruvate kinases and contains the FBP (fructose 1,6-bisphosphate) binding site [2,4,5].
Domain
A,
B,
C,
D,
E,
PF00224Pyruvate kinase, barrel domain (PK)Pyruvate kinase, barrel domainThis is the barrel domain of pyruvate kinases. This domain represents the beta/alpha barrel and the small beta-barrel domain inserted within it. The active site is found in a cleft between the two domains [1,2,3,4].Domain