1QTY | pdb_00001qty

VASCULAR ENDOTHELIAL GROWTH FACTOR IN COMPLEX WITH DOMAIN 2 OF THE FLT-1 RECEPTOR

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
A [auth V]d1qtyv_ Small proteins Cystine-knot cytokines Cystine-knot cytokines Platelet-derived growth factor-like Vascular endothelial growth factor, VEGF human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
B [auth W]d1qtyw_ Small proteins Cystine-knot cytokines Cystine-knot cytokines Platelet-derived growth factor-like Vascular endothelial growth factor, VEGF human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
C [auth R]d1qtyr_ Small proteins Cystine-knot cytokines Cystine-knot cytokines Platelet-derived growth factor-like Vascular endothelial growth factor, VEGF human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
D [auth S]d1qtys_ Small proteins Cystine-knot cytokines Cystine-knot cytokines Platelet-derived growth factor-like Vascular endothelial growth factor, VEGF human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
E [auth X]d1qtyx_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin I set domains Second domain of the Flt-1 receptor human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
F [auth Y]d1qtyy_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin I set domains Second domain of the Flt-1 receptor human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
G [auth T]d1qtyt_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin I set domains Second domain of the Flt-1 receptor human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
H [auth U]d1qtyu_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin I set domains Second domain of the Flt-1 receptor human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
E [auth X]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054805 3000071 SCOP2B (2022-06-29)
F [auth Y]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054805 3000071 SCOP2B (2022-06-29)
G [auth T]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054805 3000071 SCOP2B (2022-06-29)
H [auth U]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054805 3000071 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth V]e1qtyV1 A: C-terminal subdomain in Lon-related proteases catalytic domainsX: C-terminal subdomain in Lon-related proteases catalytic domainsH: C-terminal subdomain in Lon-related proteases catalytic domainsT: EGF_CAF:ECOD (20:10:01)
B [auth W]e1qtyW1 A: C-terminal subdomain in Lon-related proteases catalytic domainsX: C-terminal subdomain in Lon-related proteases catalytic domainsH: C-terminal subdomain in Lon-related proteases catalytic domainsT: EGF_CAF:ECOD (20:10:01)
C [auth R]e1qtyR1 A: C-terminal subdomain in Lon-related proteases catalytic domainsX: C-terminal subdomain in Lon-related proteases catalytic domainsH: C-terminal subdomain in Lon-related proteases catalytic domainsT: EGF_CAF:ECOD (20:10:01)
D [auth S]e1qtyS1 A: C-terminal subdomain in Lon-related proteases catalytic domainsX: C-terminal subdomain in Lon-related proteases catalytic domainsH: C-terminal subdomain in Lon-related proteases catalytic domainsT: EGF_CAF:ECOD (20:10:01)
E [auth X]e1qtyX1 A: Cloacin translocation domainX: Cloacin translocation domainH: Cloacin translocation domainT: Copper-bindF:ECOD (20:10:01)
F [auth Y]e1qtyY1 A: Cloacin translocation domainX: Cloacin translocation domainH: Cloacin translocation domainT: Copper-bindF:ECOD (20:10:01)
G [auth T]e1qtyT1 A: Cloacin translocation domainX: Cloacin translocation domainH: Cloacin translocation domainT: Copper-bindF:ECOD (20:10:01)
H [auth U]e1qtyU1 A: Cloacin translocation domainX: Cloacin translocation domainH: Cloacin translocation domainT: Copper-bindF:ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A [auth V]2.10.90.10 Mainly Beta Ribbon Cystine Knot Cytokines, subunit B Cystine-knot cytokinesCATH (4.3.0)
B [auth W]2.10.90.10 Mainly Beta Ribbon Cystine Knot Cytokines, subunit B Cystine-knot cytokinesCATH (4.3.0)
C [auth R]2.10.90.10 Mainly Beta Ribbon Cystine Knot Cytokines, subunit B Cystine-knot cytokinesCATH (4.3.0)
D [auth S]2.10.90.10 Mainly Beta Ribbon Cystine Knot Cytokines, subunit B Cystine-knot cytokinesCATH (4.3.0)
E [auth X]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
F [auth Y]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
G [auth T]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
H [auth U]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)

IMGT Antibody Annotation IMGT Database Homepage

ChainProtein NameDescriptionOrganism NameGene Allele Name(s)Domain Name(s)Receptor TypeReceptor DescriptionProvenance Source
E [auth X],
F [auth Y],
G [auth T],
H [auth U]		FLT1 receptor (domain 2) FLT1 Homo sapiens (human) FLT1*01 C-LIKE-DOMAIN C-LIKE RPI FLT1 IMGT (202609-0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth V],
B [auth W],
C [auth R],
D [auth S]		PF00341PDGF/VEGF domain (PDGF)PDGF/VEGF domainDomain
E [auth X],
F [auth Y],
G [auth T],
H [auth U]		PF21339Vascular endothelial growth factor receptor 1-like, Ig-like domain (VEGFR-1-like_Ig-like)Vascular endothelial growth factor receptor 1-like, Ig-like domainThis domain is found in Vascular endothelial growth factor receptor 1 from humans (VEGFR-1) and similar proteins from animals. VEGFR-1 is a tyrosine kinase receptor for the placental growth factor (PlGF) that plays an essential role in the developmen ...This domain is found in Vascular endothelial growth factor receptor 1 from humans (VEGFR-1) and similar proteins from animals. VEGFR-1 is a tyrosine kinase receptor for the placental growth factor (PlGF) that plays an essential role in the development of embryonic vasculature, the regulation of angiogenesis and other essential cellular processes. It consists of seven immunoglobulin-like (Ig-like) domains in its extracellular portion. This entry represents the second of these domains [1-5].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth V],
B [auth W],
C [auth R],
D [auth S]		VASCULAR ENDOTHELIAL GROWTH FACTOR
E [auth X],
F [auth Y],
G [auth T],
H [auth U]		FMS-LIKE TYROSINE KINASE 1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth V],
B [auth W],
C [auth R],
D [auth S]		IPR029034Cystine-knot cytokineHomologous Superfamily
A [auth V],
B [auth W],
C [auth R],
D [auth S]		IPR036841Vascular endothelial growth factor, heparin-binding domain superfamilyHomologous Superfamily
A [auth V],
B [auth W],
C [auth R],
D [auth S]		IPR023581Platelet-derived growth factor, conserved siteConserved Site
A [auth V],
B [auth W],
C [auth R],
D [auth S]		IPR000072PDGF/VEGF domainDomain
A [auth V],
B [auth W],
C [auth R],
D [auth S]		IPR027928Vascular endothelial growth factor, heparin-binding domainDomain
A [auth V],
B [auth W],
C [auth R],
D [auth S]		IPR050507Platelet-derived/Vascular endothelial growth factorFamily
E [auth X],
F [auth Y],
G [auth T],
H [auth U]		IPR001824Tyrosine-protein kinase, receptor class III, conserved siteConserved Site
E [auth X],
F [auth Y],
G [auth T],
H [auth U]		IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
E [auth X],
F [auth Y],
G [auth T],
H [auth U]		IPR008266Tyrosine-protein kinase, active siteActive Site
E [auth X],
F [auth Y],
G [auth T],
H [auth U]		IPR020635Tyrosine-protein kinase, catalytic domainDomain
E [auth X],
F [auth Y],
G [auth T],
H [auth U]		IPR000719Protein kinase domainDomain
E [auth X],
F [auth Y],
G [auth T],
H [auth U]		IPR013106Immunoglobulin V-set domainDomain
E [auth X],
F [auth Y],
G [auth T],
H [auth U]		IPR003599Immunoglobulin domain subtypeDomain
E [auth X],
F [auth Y],
G [auth T],
H [auth U]		IPR013151Immunoglobulin-like beta-sandwich domainDomain
E [auth X],
F [auth Y],
G [auth T],
H [auth U]		IPR013783Immunoglobulin-like foldHomologous Superfamily
E [auth X],
F [auth Y],
G [auth T],
H [auth U]		IPR007110Immunoglobulin-like domainDomain
E [auth X],
F [auth Y],
G [auth T],
H [auth U]		IPR055229VEGFR1-3, fifth immunoglobulin-like domainDomain
E [auth X],
F [auth Y],
G [auth T],
H [auth U]		IPR055238VEGFR1-3-like, N-terminal Ig-like domainDomain
E [auth X],
F [auth Y],
G [auth T],
H [auth U]		IPR017441Protein kinase, ATP binding siteBinding Site
E [auth X],
F [auth Y],
G [auth T],
H [auth U]		IPR003598Immunoglobulin subtype 2Domain
E [auth X],
F [auth Y],
G [auth T],
H [auth U]		IPR001245Serine-threonine/tyrosine-protein kinase, catalytic domainDomain
E [auth X],
F [auth Y],
G [auth T],
H [auth U]		IPR013098Immunoglobulin I-setDomain
E [auth X],
F [auth Y],
G [auth T],
H [auth U]		IPR011009Protein kinase-like domain superfamilyHomologous Superfamily
E [auth X],
F [auth Y],
G [auth T],
H [auth U]		IPR041348VEGFR-2, transmembrane domainDomain
E [auth X],
F [auth Y],
G [auth T],
H [auth U]		IPR050122Receptor Tyrosine KinaseFamily
E [auth X],
F [auth Y],
G [auth T],
H [auth U]		IPR009135Vascular endothelial growth factor receptor 1 (VEGFR1)Family

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A [auth V],
B [auth W],
C [auth R],
D [auth S]		Pharos:  P15692
E [auth X],
F [auth Y],
G [auth T],
H [auth U]		Pharos:  P17948