Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyCdc48 domain 2-like 8032514 3000725 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyDNA polymerases epsilon, N-terminal domain (Dpoe2NT)-like 8104156 3002834 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyRecA-like P-loop NTPases 8032512 3002019 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyADC-like 8032511 3001132 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ACDC48_Ne1r7rA9 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: double psiF: CDC48_NECOD (1.6)
ACDC48e1r7rA7 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: CDC48ECOD (1.6)
AVps4_C_Ce1r7rA4 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: Vps4_C_CECOD (1.6)
ACDC48_2e1r7rA8 A: a+b two layersX: Cdc48 domain 2-like (From Topology)H: Cdc48 domain 2-like (From Topology)T: Cdc48 domain 2-likeF: CDC48_2ECOD (1.6)
ASigma54_activate1r7rA6 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Sigma54_activatECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A2.40.40.20 Mainly Beta Beta Barrel Barwin-like endoglucanases CATH (4.3.0)
A3.10.330.10 Alpha Beta Roll Vcp-like ATPase Chain A, domain 2CATH (4.3.0)
A3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolasesCATH (4.3.0)
A1.10.8.60 Mainly Alpha Orthogonal Bundle Helicase, Ruva Protein domain 3CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF02933Cell division protein 48 (CDC48), domain 2 (CDC48_2)Cell division protein 48 (CDC48), domain 2This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at t ...Domain
PF17862AAA+ lid domain (AAA_lid_3)AAA+ lid domainThis entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. Domain
PF00004ATPase family associated with various cellular activities (AAA) (AAA)ATPase family associated with various cellular activities (AAA)AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. Domain
PF02359Cell division protein 48 (CDC48), N-terminal domain (CDC48_N)Cell division protein 48 (CDC48), N-terminal domainThis domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at t ...Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Transitional endoplasmic reticulum ATPase