1RWT | pdb_00001rwt

Crystal Structure of Spinach Major Light-harvesting complex at 2.72 Angstrom Resolution

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD
Membrane Protein Annotation: mpstruc

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d1rwtd_	Membrane and cell surface proteins and peptides	Chlorophyll a-b binding protein	Chlorophyll a-b binding protein	Chlorophyll a-b binding protein	Chlorophyll a-b binding protein	(Spinacia oleracea ) [TaxId: 3562 ],	SCOPe (2.08)
E	d1rwte_	Membrane and cell surface proteins and peptides	Chlorophyll a-b binding protein	Chlorophyll a-b binding protein	Chlorophyll a-b binding protein	Chlorophyll a-b binding protein	(Spinacia oleracea ) [TaxId: 3562 ],	SCOPe (2.08)
F	d1rwtf_	Membrane and cell surface proteins and peptides	Chlorophyll a-b binding protein	Chlorophyll a-b binding protein	Chlorophyll a-b binding protein	Chlorophyll a-b binding protein	(Spinacia oleracea ) [TaxId: 3562 ],	SCOPe (2.08)
H	d1rwth_	Membrane and cell surface proteins and peptides	Chlorophyll a-b binding protein	Chlorophyll a-b binding protein	Chlorophyll a-b binding protein	Chlorophyll a-b binding protein	(Spinacia oleracea ) [TaxId: 3562 ],	SCOPe (2.08)
I	d1rwti_	Membrane and cell surface proteins and peptides	Chlorophyll a-b binding protein	Chlorophyll a-b binding protein	Chlorophyll a-b binding protein	Chlorophyll a-b binding protein	(Spinacia oleracea ) [TaxId: 3562 ],	SCOPe (2.08)
J	d1rwtj_	Membrane and cell surface proteins and peptides	Chlorophyll a-b binding protein	Chlorophyll a-b binding protein	Chlorophyll a-b binding protein	Chlorophyll a-b binding protein	(Spinacia oleracea ) [TaxId: 3562 ],	SCOPe (2.08)
G	d1rwtg_	Membrane and cell surface proteins and peptides	Chlorophyll a-b binding protein	Chlorophyll a-b binding protein	Chlorophyll a-b binding protein	Chlorophyll a-b binding protein	(Spinacia oleracea ) [TaxId: 3562 ],	SCOPe (2.08)
C	d1rwtc_	Membrane and cell surface proteins and peptides	Chlorophyll a-b binding protein	Chlorophyll a-b binding protein	Chlorophyll a-b binding protein	Chlorophyll a-b binding protein	(Spinacia oleracea ) [TaxId: 3562 ],	SCOPe (2.08)
B	d1rwtb_	Membrane and cell surface proteins and peptides	Chlorophyll a-b binding protein	Chlorophyll a-b binding protein	Chlorophyll a-b binding protein	Chlorophyll a-b binding protein	(Spinacia oleracea ) [TaxId: 3562 ],	SCOPe (2.08)
A	d1rwta_	Membrane and cell surface proteins and peptides	Chlorophyll a-b binding protein	Chlorophyll a-b binding protein	Chlorophyll a-b binding protein	Chlorophyll a-b binding protein	(Spinacia oleracea ) [TaxId: 3562 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	Chlorophyll a-b binding protein	8041052	3000343	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Chlorophyll a-b binding protein	8041052	3000343	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Chlorophyll a-b binding protein	8041052	3000343	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Chlorophyll a-b binding protein	8041052	3000343	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Chlorophyll a-b binding protein	8041052	3000343	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Chlorophyll a-b binding protein	8041052	3000343	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Chlorophyll a-b binding protein	8041052	3000343	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Chlorophyll a-b binding protein	8041052	3000343	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Chlorophyll a-b binding protein	8041052	3000343	SCOP2B (2022-06-29)
A	SCOP2 Family	Chlorophyll a-b binding protein	8028673	4001763	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Chlorophyll a-b binding protein	8041052	3000343	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	HD	e1rwtD1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: Rpp14/Pop5-like	T: Rpp14/Pop5-like	F: HD	ECOD (v294.1)
E	HD	e1rwtE1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: Rpp14/Pop5-like	T: Rpp14/Pop5-like	F: HD	ECOD (v294.1)
F	HD	e1rwtF1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: Rpp14/Pop5-like	T: Rpp14/Pop5-like	F: HD	ECOD (v294.1)
H	HD	e1rwtH1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: Rpp14/Pop5-like	T: Rpp14/Pop5-like	F: HD	ECOD (v294.1)
I	HD	e1rwtI1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: Rpp14/Pop5-like	T: Rpp14/Pop5-like	F: HD	ECOD (v294.1)
J	HD	e1rwtJ1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: Rpp14/Pop5-like	T: Rpp14/Pop5-like	F: HD	ECOD (v294.1)
G	HD	e1rwtG1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: Rpp14/Pop5-like	T: Rpp14/Pop5-like	F: HD	ECOD (v294.1)
C	HD	e1rwtC1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: Rpp14/Pop5-like	T: Rpp14/Pop5-like	F: HD	ECOD (v294.1)
B	HD	e1rwtB1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: Rpp14/Pop5-like	T: Rpp14/Pop5-like	F: HD	ECOD (v294.1)
A	Chloroa_b-bind	e1rwtA1	A: extended segments	X: Chlorophyll a-b binding protein	H: Chlorophyll a-b binding protein	T: Chlorophyll a-b binding protein	F: Chloroa_b-bind	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	1.10.3460.10	Mainly Alpha	Orthogonal Bundle	Chlorophyll a-b binding protein	Chlorophyll a/b binding protein domain	CATH (4.3.0)
E	1.10.3460.10	Mainly Alpha	Orthogonal Bundle	Chlorophyll a-b binding protein	Chlorophyll a/b binding protein domain	CATH (4.3.0)
F	1.10.3460.10	Mainly Alpha	Orthogonal Bundle	Chlorophyll a-b binding protein	Chlorophyll a/b binding protein domain	CATH (4.3.0)
H	1.10.3460.10	Mainly Alpha	Orthogonal Bundle	Chlorophyll a-b binding protein	Chlorophyll a/b binding protein domain	CATH (4.3.0)
I	1.10.3460.10	Mainly Alpha	Orthogonal Bundle	Chlorophyll a-b binding protein	Chlorophyll a/b binding protein domain	CATH (4.3.0)
J	1.10.3460.10	Mainly Alpha	Orthogonal Bundle	Chlorophyll a-b binding protein	Chlorophyll a/b binding protein domain	CATH (4.3.0)
G	1.10.3460.10	Mainly Alpha	Orthogonal Bundle	Chlorophyll a-b binding protein	Chlorophyll a/b binding protein domain	CATH (4.3.0)
C	1.10.3460.10	Mainly Alpha	Orthogonal Bundle	Chlorophyll a-b binding protein	Chlorophyll a/b binding protein domain	CATH (4.3.0)
B	1.10.3460.10	Mainly Alpha	Orthogonal Bundle	Chlorophyll a-b binding protein	Chlorophyll a/b binding protein domain	CATH (4.3.0)
A	1.10.3460.10	Mainly Alpha	Orthogonal Bundle	Chlorophyll a-b binding protein	Chlorophyll a/b binding protein domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	PF00504	Chlorophyll A-B binding protein (Chloroa_b-bind)	Chlorophyll A-B binding protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	Chlorophyll A-B binding protein, chloroplast	chlorophyll binding binding tetrapyrrole binding cation binding ion binding metal ion binding small molecule binding	response to light stimulus response to stimulus response to radiation response to abiotic stimulus photosynthesis, light harvesting in photosystem I photosynthesis photosynthesis, light reaction photosynthesis, light harvesting metabolic process cellular process generation of precursor metabolites and energy	protein-containing complex photosystem intracellular anatomical structure photosystem II membrane membrane protein complex intracellular membraneless organelle intracellular organelle cellular anatomical structure organelle membraneless organelle photosynthetic membrane thylakoid chloroplast thylakoid membrane protein-containing complex photosystem intracellular anatomical structure photosystem II membrane membrane protein complex intracellular membraneless organelle intracellular organelle cellular anatomical structure organelle membraneless organelle photosynthetic membrane thylakoid chloroplast thylakoid membrane membrane-bounded organelle plastid membrane plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid organelle envelope bounding membrane of organelle plastid envelope chloroplast intracellular membrane-bounded organelle thylakoid membrane chloroplast thylakoid outer membrane cytoplasm organelle membrane photosystem I

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR001344	Chlorophyll A-B binding protein, plant and chromista	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR022796	Chlorophyll A-B binding protein	Family

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	OPM	Transmembrane	Alpha-helical polytopic	Photosystems	Light-harvesting complexes from chloroplasts

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	MemProtMD	Annotated as membrane protein by MemProtMD

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	mpstruc	TRANSMEMBRANE PROTEINS: ALPHA-HELICAL	Light-Harvesting Complexes	Light-Harvesting Complex LHC-II, Spinach Photosystem II

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.