1SHY
The Crystal Structure of HGF beta-chain in Complex with the Sema Domain of the Met Receptor.
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1shya_ | All beta proteins | Trypsin-like serine proteases | Trypsin-like serine proteases | Eukaryotic proteases | Hepatocyte growth factor, HGF | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B | d1shyb1 | All beta proteins | 7-bladed beta-propeller | Sema domain | Sema domain | Hepatocyte growth factor receptor | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
B | d1shyb2 | Small proteins | Trefoil/Plexin domain-like | Plexin repeat | Plexin repeat | Hepatocyte growth factor receptor | human (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Trypsin-like serine proteases | 8042342 | 3000114 | SCOP2B (2022-06-29) |
B | SCOP2 Family | Sema domain-like | 8027086 | 4000934 | SCOP2 (2022-06-29) |
B | SCOP2 Family | Plexin repeat-like | 8027087 | 4001807 | SCOP2 (2022-06-29) |
B | SCOP2 Superfamily | Sema domain-like | 8039465 | 3000180 | SCOP2 (2022-06-29) |
B | SCOP2 Superfamily | Plexin repeat-like | 8039466 | 3000415 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Trypsin_1 | e1shyA1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: FMN-binding split barrel 2 | F: Trypsin_1 | ECOD (1.6) |
B | Sema_2 | e1shyB1 | A: beta duplicates or obligate multimers | X: beta-propeller-like | H: beta-propeller | T: 7-bladed | F: Sema_2 | ECOD (1.6) |
B | PSI_1 | e1shyB2 | A: few secondary structure elements | X: Trefoil/Plexin domain-like (From Topology) | H: Trefoil/Plexin domain-like (From Topology) | T: Trefoil/Plexin domain-like | F: PSI_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.40.10.10 | Mainly Beta | Beta Barrel | Thrombin, subunit H | Trypsin-like serine proteases | CATH (4.3.0) |
B | 2.130.10.10 | Mainly Beta | 7 Propeller | Methylamine Dehydrogenase | Chain H | CATH (4.3.0) |
B | 3.30.1680.10 | Alpha Beta | 2-Layer Sandwich | ligand-binding face of the semaphorins, domain 2 | ligand-binding face of the semaphorins, domain 2 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00089 | Trypsin (Trypsin) | Trypsin | - | Domain | |
PF01437 | Plexin repeat (PSI) | Plexin repeat | - | Family | |
PF01403 | Sema domain (Sema) | Sema domain | - | Repeat |