1T3Q | pdb_00001t3q

Crystal structure of quinoline 2-Oxidoreductase from Pseudomonas Putida 86

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1t3qa1	All alpha proteins	CO dehydrogenase ISP C-domain like	CO dehydrogenase ISP C-domain like	CO dehydrogenase ISP C-domain like	Quinoline 2-oxidoreductase small subunit QorS, C-domain	(Pseudomonas putida ) [TaxId: 303 ],	SCOPe (2.08)
A	d1t3qa2	Alpha and beta proteins (a+b)	beta-Grasp (ubiquitin-like)	2Fe-2S ferredoxin-like	2Fe-2S ferredoxin domains from multidomain proteins	Quinoline 2-oxidoreductase small subunit QorS, N-domain	(Pseudomonas putida ) [TaxId: 303 ],	SCOPe (2.08)
D	d1t3qd1	All alpha proteins	CO dehydrogenase ISP C-domain like	CO dehydrogenase ISP C-domain like	CO dehydrogenase ISP C-domain like	Quinoline 2-oxidoreductase small subunit QorS, C-domain	(Pseudomonas putida ) [TaxId: 303 ],	SCOPe (2.08)
D	d1t3qd2	Alpha and beta proteins (a+b)	beta-Grasp (ubiquitin-like)	2Fe-2S ferredoxin-like	2Fe-2S ferredoxin domains from multidomain proteins	Quinoline 2-oxidoreductase small subunit QorS, N-domain	(Pseudomonas putida ) [TaxId: 303 ],	SCOPe (2.08)
C	d1t3qc1	Alpha and beta proteins (a+b)	CO dehydrogenase flavoprotein C-domain-like	CO dehydrogenase flavoprotein C-terminal domain-like	CO dehydrogenase flavoprotein C-terminal domain-like	Quinoline 2-oxidoreductase medium subunit QorM	(Pseudomonas putida ) [TaxId: 303 ],	SCOPe (2.08)
C	d1t3qc2	Alpha and beta proteins (a+b)	FAD-binding/transporter-associated domain-like	FAD-binding/transporter-associated domain-like	CO dehydrogenase flavoprotein N-terminal domain-like	Quinoline 2-oxidoreductase medium subunit QorM	(Pseudomonas putida ) [TaxId: 303 ],	SCOPe (2.08)
F	d1t3qf1	Alpha and beta proteins (a+b)	CO dehydrogenase flavoprotein C-domain-like	CO dehydrogenase flavoprotein C-terminal domain-like	CO dehydrogenase flavoprotein C-terminal domain-like	Quinoline 2-oxidoreductase medium subunit QorM	(Pseudomonas putida ) [TaxId: 303 ],	SCOPe (2.08)
F	d1t3qf2	Alpha and beta proteins (a+b)	FAD-binding/transporter-associated domain-like	FAD-binding/transporter-associated domain-like	CO dehydrogenase flavoprotein N-terminal domain-like	Quinoline 2-oxidoreductase medium subunit QorM	(Pseudomonas putida ) [TaxId: 303 ],	SCOPe (2.08)
B	d1t3qb1	Alpha and beta proteins (a+b)	alpha/beta-Hammerhead	CO dehydrogenase molybdoprotein N-domain-like	CO dehydrogenase molybdoprotein N-domain-like	Quinoline 2-oxidoreductase large subunit QorL, N-domain	(Pseudomonas putida ) [TaxId: 303 ],	SCOPe (2.08)
B	d1t3qb2	Alpha and beta proteins (a+b)	Molybdenum cofactor-binding domain	Molybdenum cofactor-binding domain	Molybdenum cofactor-binding domain	Quinoline 2-oxidoreductase large subunit QorL	(Pseudomonas putida ) [TaxId: 303 ],	SCOPe (2.08)
E	d1t3qe1	Alpha and beta proteins (a+b)	alpha/beta-Hammerhead	CO dehydrogenase molybdoprotein N-domain-like	CO dehydrogenase molybdoprotein N-domain-like	Quinoline 2-oxidoreductase large subunit QorL, N-domain	(Pseudomonas putida ) [TaxId: 303 ],	SCOPe (2.08)
E	d1t3qe2	Alpha and beta proteins (a+b)	Molybdenum cofactor-binding domain	Molybdenum cofactor-binding domain	Molybdenum cofactor-binding domain	Quinoline 2-oxidoreductase large subunit QorL	(Pseudomonas putida ) [TaxId: 303 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	CO dehydrogenase ISP C-domain like	8027559	4001010	SCOP2 (2022-06-29)
A	SCOP2 Family	2Fe-2S ferredoxin domains from multidomain proteins	8027562	4000241	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	CO dehydrogenase ISP C-domain like	8039938	3000439	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	2Fe-2S ferredoxin-like	8039941	3000113	SCOP2 (2022-06-29)
D	SCOP2B Superfamily	CO dehydrogenase ISP C-domain like	8039938	3000439	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	2Fe-2S ferredoxin-like	8039941	3000113	SCOP2B (2022-06-29)
C	SCOP2 Family	CO dehydrogenase flavoprotein C-terminal domain-like	8027565	4001591	SCOP2 (2022-06-29)
C	SCOP2 Family	CO dehydrogenase flavoprotein N-terminal domain-like	8027568	4002187	SCOP2 (2022-06-29)
C	SCOP2 Superfamily	CO dehydrogenase flavoprotein C-terminal domain-like	8039944	3001921	SCOP2 (2022-06-29)
C	SCOP2 Superfamily	FAD-binding/transporter-associated domain-like	8039947	3000913	SCOP2 (2022-06-29)
F	SCOP2B Superfamily	FAD-binding/transporter-associated domain-like	8039947	3000913	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	CO dehydrogenase flavoprotein C-terminal domain-like	8039944	3001921	SCOP2B (2022-06-29)
B	SCOP2 Family	CO dehydrogenase molybdoprotein N-domain-like	8027563	4001129	SCOP2 (2022-06-29)
B	SCOP2 Family	Molybdenum cofactor-binding domain	8027564	4001972	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	CO dehydrogenase molybdoprotein N-domain-like	8039942	3000847	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	Molybdenum cofactor-binding domain	8039943	3000625	SCOP2 (2022-06-29)
E	SCOP2B Superfamily	Molybdenum cofactor-binding domain	8039943	3000625	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	CO dehydrogenase molybdoprotein N-domain-like	8039942	3000847	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PAP2	e1t3qA1	A: alpha bundles	X: EGF-like	H: Flavivirus capsid protein C	T: Flavivirus capsid protein C	F: PAP2	ECOD (develop294)
A	S4	e1t3qA2	A: alpha bundles	X: EGF-like	H: LDL receptor-like module	T: LDL receptor-like module	F: S4	ECOD (develop294)
D	PAP2	e1t3qD1	A: alpha bundles	X: EGF-like	H: Flavivirus capsid protein C	T: Flavivirus capsid protein C	F: PAP2	ECOD (develop294)
D	S4	e1t3qD2	A: alpha bundles	X: EGF-like	H: LDL receptor-like module	T: LDL receptor-like module	F: S4	ECOD (develop294)
C	CO_deh_flav_C	e1t3qC1	A: a+b two layers	X: FAD-linked reductases, C-terminal domain-like	H: SufE/NifU	T: SufE/NifU	F: CO_deh_flav_C	ECOD (develop294)
C	FAD_binding_5	e1t3qC2	A: beta duplicates or obligate multimers	X: FAD-binding domain-like	H: FAD-binding domain	T: FAD-binding domain	F: FAD_binding_5	ECOD (develop294)
F	YceM-like_C	e1t3qF1	A: alpha bundles	X: EGF-like	H: LDL receptor-like module	T: LDL receptor-like module	F: YceM-like_C	ECOD (develop294)
F	LRR_6,LRR_RI_capping	e1t3qF2	A: alpha bundles	X: EGF-like	H: LDL receptor-like module	T: LDL receptor-like module	F: LRR_6,LRR_RI_capping	ECOD (develop294)
B	Ald_Xan_dh_C	e1t3qB2	A: few secondary structure elements	X: alpha/beta-Hammerhead/Barrel-sandwich hybrid	H: alpha/beta-Hammerhead/Barrel-sandwich hybrid	T: CO dehydrogenase molybdoprotein N-domain-like	F: Ald_Xan_dh_C	ECOD (develop294)
B	TPP_enzyme_C	e1t3qB3	A: alpha bundles	X: Insertion domain in tetravirus coat protein	H: Thiamin diphosphate-binding fold (THDP-binding)	T: Thiamin diphosphate-binding fold (THDP-binding)	F: TPP_enzyme_C	ECOD (develop294)
E	Biotin_carb_C	e1t3qE2	A: alpha bundles	X: EGF-like	H: LDL receptor-like module	T: LDL receptor-like module	F: Biotin_carb_C	ECOD (develop294)
E	Adaptin_N, Cnd1	e1t3qE1	A: alpha bundles	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: Adaptin_N, Cnd1	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.10.20.30	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Beta-grasp domain	CATH (4.3.0)
A	1.10.150.120	Mainly Alpha	Orthogonal Bundle	DNA polymerase	domain 1	CATH (4.3.0)
D	3.10.20.30	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Beta-grasp domain	CATH (4.3.0)
D	1.10.150.120	Mainly Alpha	Orthogonal Bundle	DNA polymerase	domain 1	CATH (4.3.0)
C	3.30.43.10	Alpha Beta	2-Layer Sandwich	Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase	domain 2	CATH (4.3.0)
C	3.30.465.10	Alpha Beta	2-Layer Sandwich	Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase	domain 3	CATH (4.3.0)
C	3.30.390.50	Alpha Beta	2-Layer Sandwich	Enolase-like	domain 1	CATH (4.3.0)
F	3.30.43.10	Alpha Beta	2-Layer Sandwich	Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase	domain 2	CATH (4.3.0)
F	3.30.465.10	Alpha Beta	2-Layer Sandwich	Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase	domain 3	CATH (4.3.0)
F	3.30.390.50	Alpha Beta	2-Layer Sandwich	Enolase-like	domain 1	CATH (4.3.0)
B	3.90.1170.50	Alpha Beta	Alpha-Beta Complex	Aldehyde Oxidoreductase	domain 3	CATH (utative)
B	3.30.365.10	Alpha Beta	2-Layer Sandwich	Aldehyde Oxidoreductase	domain 4	CATH (utative)
E	3.90.1170.50	Alpha Beta	Alpha-Beta Complex	Aldehyde Oxidoreductase	domain 3	CATH (utative)
E	3.30.365.10	Alpha Beta	2-Layer Sandwich	Aldehyde Oxidoreductase	domain 4	CATH (utative)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, D	quinoline 2-oxidoreductase small subunit	oxidoreductase activity catalytic activity iron-sulfur cluster binding 2 iron, 2 sulfur cluster binding binding metal cluster binding small molecule binding cation binding ion binding metal ion binding	-	-
C, F	quinoline 2-oxidoreductase medium subunit	oxidoreductase activity catalytic activity FAD binding flavin adenine dinucleotide binding binding nucleoside phosphate binding ion binding anion binding nucleotide binding heterocyclic compound binding small molecule binding	-	-
B, E	quinoline 2-oxidoreductase large subunit	oxidoreductase activity catalytic activity cation binding transition metal ion binding iron ion binding ion binding binding metal ion binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, D	IPR002888	[2Fe-2S]-binding	Domain
A, D	IPR036010	2Fe-2S ferredoxin-like superfamily	Homologous Superfamily
A, D	IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	Domain
A, D	IPR036884	[2Fe-2S]-binding domain superfamily	Homologous Superfamily
A, D	IPR051452	Diverse Oxidoreductases	Family
A, D	IPR012675	Beta-grasp domain superfamily	Homologous Superfamily
A, D	IPR006058	2Fe-2S ferredoxin, iron-sulphur binding site	Binding Site
C, F	IPR016167	FAD-binding, type PCMH, subdomain 1	Homologous Superfamily
C, F	IPR036683	CO dehydrogenase flavoprotein, C-terminal domain superfamily	Homologous Superfamily
C, F	IPR051312	Diverse Substrate Oxidoreductases	Family
C, F	IPR036318	FAD-binding, type PCMH-like superfamily	Homologous Superfamily
C, F	IPR016169	FAD-binding, type PCMH, subdomain 2	Homologous Superfamily
C, F	IPR016166	FAD-binding domain, PCMH-type	Domain
C, F	IPR005107	CO dehydrogenase flavoprotein, C-terminal	Domain
C, F	IPR002346	Molybdopterin dehydrogenase, FAD-binding	Domain
B, E	IPR046867	Aldehyde oxidase/xanthine dehydrogenase, second molybdopterin binding domain	Domain
B, E	IPR000674	Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead	Domain
B, E	IPR016208	Aldehyde oxidase/xanthine dehydrogenase-like	Family
B, E	IPR036856	Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily	Homologous Superfamily
B, E	IPR037165	Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily	Homologous Superfamily
B, E	IPR008274	Aldehyde oxidase/xanthine dehydrogenase, first molybdopterin binding domain	Domain