1TYE | pdb_00001tye

Structural basis for allostery in integrins and binding of ligand-mimetic therapeutics to the platelet receptor for fibrinogen


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Bd1tyeb1 All beta proteins Immunoglobulin-like beta-sandwich Integrin domains Integrin domains Hybrid domain of integrin beta human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Bd1tyeb2 Alpha and beta proteins (a/b) vWA-like vWA-like Integrin A (or I) domain Integrin beta A domain human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Bd1tyeb3 Small proteins Trefoil/Plexin domain-like Plexin repeat Plexin repeat Integrin beta-3 human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Fd1tyef1 All beta proteins Immunoglobulin-like beta-sandwich Integrin domains Integrin domains Hybrid domain of integrin beta human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Fd1tyef2 Alpha and beta proteins (a/b) vWA-like vWA-like Integrin A (or I) domain Integrin beta A domain human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Fd1tyef3 Small proteins Trefoil/Plexin domain-like Plexin repeat Plexin repeat Integrin beta-3 human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Dd1tyed1 All beta proteins Immunoglobulin-like beta-sandwich Integrin domains Integrin domains Hybrid domain of integrin beta human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Dd1tyed2 Alpha and beta proteins (a/b) vWA-like vWA-like Integrin A (or I) domain Integrin beta A domain human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Dd1tyed3 Small proteins Trefoil/Plexin domain-like Plexin repeat Plexin repeat Integrin beta-3 human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Ad1tyea_ All beta proteins 7-bladed beta-propeller Integrin alpha N-terminal domain Integrin alpha N-terminal domain Integrin alpha N-terminal domain human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Cd1tyec_ All beta proteins 7-bladed beta-propeller Integrin alpha N-terminal domain Integrin alpha N-terminal domain Integrin alpha N-terminal domain human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
Ed1tyee_ All beta proteins 7-bladed beta-propeller Integrin alpha N-terminal domain Integrin alpha N-terminal domain Integrin alpha N-terminal domain human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2 FamilyPlexin repeat-like 8030353 4001807 SCOP2 (2022-06-29)
BSCOP2 SuperfamilyPlexin repeat-like 8042732 3000415 SCOP2 (2022-06-29)
BSCOP2B SuperfamilyIntegrin domains 8055552 3002062 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyIntegrin domains 8055552 3002062 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyvWA-like 8055554 3000832 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyPlexin repeat-like 8042732 3000415 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyIntegrin domains 8055552 3002062 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyvWA-like 8055554 3000832 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyIntegrin domains 8055552 3002062 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyIntegrin domains 8055552 3002062 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyvWA-like 8055554 3000832 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyIntegrin domains 8055552 3002062 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyPlexin repeat-like 8042732 3000415 SCOP2B (2022-06-29)
ASCOP2 FamilyIntegrin alpha N-terminal domain 8030349 4003137 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyIntegrin alpha N-terminal domain 8042728 3000314 SCOP2 (2022-06-29)
CSCOP2B SuperfamilyIntegrin alpha N-terminal domain 8042728 3000314 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyIntegrin alpha N-terminal domain 8042728 3000314 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
Be1tyeB1 A: Immunoglobulin-like beta-sandwichX: Immunoglobulin-relatedH: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeT:F:ECOD (20:10:01)
Be1tyeB2 A: Trefoil/Plexin domain-likeX: Trefoil/Plexin domain-likeH: Trefoil/Plexin domain-likeT: PSI_integrinF:ECOD (20:10:01)
Be1tyeB3 A: Flavodoxin-likeX: HAD domain-relatedH: vWA-likeT: VWAF:ECOD (20:10:01)
Fe1tyeF1 A: Thioredoxin-likeX: Thioredoxin-likeH: Thioredoxin-likeT:F:ECOD (20:10:01)
De1tyeD1 A: Thioredoxin-likeX: Thioredoxin-likeH: Thioredoxin-likeT:F:ECOD (20:10:01)
Ae1tyeA1 A: beta-propeller-likeX: beta-propellerH: 7-bladedT: FG-GAP, FG-GAP_3F:ECOD (20:10:01)
Ce1tyeC1 A: Cloacin translocation domainX: Cloacin translocation domainH: Cloacin translocation domainT: FG-GAP, FG-GAP_3F:ECOD (20:10:01)
Ee1tyeE1 A: Cloacin translocation domainX: Cloacin translocation domainH: Cloacin translocation domainT: DPPIV_NF:ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

IMGT Antibody Annotation IMGT Database Homepage

ChainProtein NameDescriptionOrganism NameGene Allele Name(s)Domain Name(s)Receptor TypeReceptor DescriptionProvenance Source
B, D, F
INTEGRIN-ALPHA-IIB_BETA-3 INTEGRIN-BETA-3 Homo sapiens (human) BETA-3 P-LIKE-DOMAIN PSI, Y-LIKE-DOMAIN Hybrid-1, B-LIKE-DOMAIN BETA-1, Y-LIKE-DOMAIN Hybrid-2 RPI INTEGRIN-ALPHA-IIB_BETA-3 IMGT (202609-0)
A, C, E
INTEGRIN-ALPHA-IIB_BETA-3 INTEGRIN-ALPHA-IIB Homo sapiens (human) ALPHA-IIB BP-LIKE-DOMAIN B-Propeller RPI INTEGRIN-ALPHA-IIB_BETA-3 IMGT (202609-0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B, D, F
PF17205Integrin plexin domain (PSI_integrin)Integrin plexin domainThis short disulphide rich domain is found at the N-terminus of integrin beta chains. Domain
B, D, F
PF00362Integrin beta chain VWA domain (Integrin_beta)Integrin beta chain VWA domainIntegrins have been found in animals and their homologues have also been found in cyanobacteria, probably due to horizontal gene transfer [1]. This domain corresponds to the integrin beta VWA domain. Domain
A, C, E
PF01839FG-GAP repeat (FG-GAP)FG-GAP repeat- Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
B, D, F
Integrin beta-3
A, C, E
Integrin alpha-IIb

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
B, D, F
PharosP05106
A, C, E
PharosP08514