Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
A [auth V]d1tzhv_ Small proteins Cystine-knot cytokines Cystine-knot cytokines Platelet-derived growth factor-like Vascular endothelial growth factor, VEGF human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
B [auth W]d1tzhw_ Small proteins Cystine-knot cytokines Cystine-knot cytokines Platelet-derived growth factor-like Vascular endothelial growth factor, VEGF human (Homo sapiens ) [TaxId: 9606 ], SCOPe (2.08)
C [auth A]d1tzha1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) Immunoglobulin light chain kappa variable domain, VL-kappa house mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
C [auth A]d1tzha2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain-like) Immunoglobulin light chain kappa constant domain, CL-kappa house mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
E [auth L]d1tzhl1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) Immunoglobulin light chain kappa variable domain, VL-kappa house mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
E [auth L]d1tzhl2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain-like) Immunoglobulin light chain kappa constant domain, CL-kappa house mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
D [auth B]d1tzhb1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) Immunoglobulin heavy chain variable domain, VH house mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
D [auth B]d1tzhb2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain-like) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma house mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
F [auth H]d1tzhh1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) Immunoglobulin heavy chain variable domain, VH house mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
F [auth H]d1tzhh2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain-like) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma house mouse (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth V]PDGFe1tzhV1 A: few secondary structure elementsX: Cystine-knot cytokines (From Topology)H: Cystine-knot cytokines (From Topology)T: Cystine-knot cytokinesF: PDGFECOD (1.6)
B [auth W]PDGFe1tzhW1 A: few secondary structure elementsX: Cystine-knot cytokines (From Topology)H: Cystine-knot cytokines (From Topology)T: Cystine-knot cytokinesF: PDGFECOD (1.6)
C [auth A]C1-set_4e1tzhA2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: C1-set_4ECOD (1.6)
C [auth A]V-sete1tzhA1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-setECOD (1.6)
E [auth L]C1-set_4e1tzhL2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: C1-set_4ECOD (1.6)
E [auth L]V-sete1tzhL1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-setECOD (1.6)
D [auth B]V-set_8e1tzhB1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_8ECOD (1.6)
D [auth B]C1-set_1e1tzhB2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: C1-set_1ECOD (1.6)
F [auth H]V-set_8e1tzhH1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_8ECOD (1.6)
F [auth H]C1-set_1e1tzhH2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: C1-set_1ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

IMGT Antibody Annotation IMGT Database Homepage

ChainProtein NameDescriptionOrganism NameGene Allele Name(s)Domain Name(s)Receptor TypeReceptor DescriptionProvenance Source
C [auth A],
E [auth L]
YADS1 L-KAPPA Mus musculus (house mouse) IGKV12-44*01, IGKJ1*01, IGKJ2*01, IGKJ2*03, IGKJ4*01, IGKJ4*02, IGKC*03 V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA IG FAB-GAMMA-1_KAPPA IMGT (202449-0)
D [auth B],
F [auth H]
YADS1 VH-CH1 Mus musculus (house mouse) IGHV5-17*01, IGHJ3*01, IGHG1*02 V-DOMAIN VH, C-DOMAIN CH1 IG FAB-GAMMA-1_KAPPA IMGT (202449-0)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
C [auth A],
E [auth L]
Light ChainIGKV12 Kappavascular endothelial growth factor aSAbDab (2024-12-13)
D [auth B],
F [auth H]
Heavy ChainIGHV5 -vascular endothelial growth factor aSAbDab (2024-12-13)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth V],
B [auth W]
PF00341PDGF/VEGF domain (PDGF)PDGF/VEGF domain- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth V],
B [auth W]
Vascular endothelial growth factor A
C [auth A],
E [auth L]
Fab YADS1 Light Chain---
D [auth B],
F [auth H]
Fab YADS1 Heavy Chain---

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A [auth V],
B [auth W]
PharosP15692