1UER | pdb_00001uer

Crystal structure of Porphyromonas gingivalis SOD


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Dd1uerd1 All alpha proteins Long alpha-hairpin Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), N-terminal domain Cambialistic superoxide dismutase (Porphyromonas gingivalis ) [TaxId: 837 ], SCOPe (2.08)
Dd1uerd2 Alpha and beta proteins (a+b) Fe,Mn superoxide dismutase (SOD), C-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain Cambialistic superoxide dismutase (Porphyromonas gingivalis ) [TaxId: 837 ], SCOPe (2.08)
Cd1uerc1 All alpha proteins Long alpha-hairpin Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), N-terminal domain Cambialistic superoxide dismutase (Porphyromonas gingivalis ) [TaxId: 837 ], SCOPe (2.08)
Cd1uerc2 Alpha and beta proteins (a+b) Fe,Mn superoxide dismutase (SOD), C-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain Cambialistic superoxide dismutase (Porphyromonas gingivalis ) [TaxId: 837 ], SCOPe (2.08)
Bd1uerb1 All alpha proteins Long alpha-hairpin Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), N-terminal domain Cambialistic superoxide dismutase (Porphyromonas gingivalis ) [TaxId: 837 ], SCOPe (2.08)
Bd1uerb2 Alpha and beta proteins (a+b) Fe,Mn superoxide dismutase (SOD), C-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain Cambialistic superoxide dismutase (Porphyromonas gingivalis ) [TaxId: 837 ], SCOPe (2.08)
Ad1uera1 All alpha proteins Long alpha-hairpin Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), N-terminal domain Cambialistic superoxide dismutase (Porphyromonas gingivalis ) [TaxId: 837 ], SCOPe (2.08)
Ad1uera2 Alpha and beta proteins (a+b) Fe,Mn superoxide dismutase (SOD), C-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain Cambialistic superoxide dismutase (Porphyromonas gingivalis ) [TaxId: 837 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
DSCOP2B SuperfamilyFe, Mn superoxide dismutase (SOD), C-terminal domain 8040813 3000916 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyFe, Mn superoxide dismutase (SOD), N-terminal domain 8040811 3000794 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyFe, Mn superoxide dismutase (SOD), N-terminal domain 8040811 3000794 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyFe, Mn superoxide dismutase (SOD), C-terminal domain 8040813 3000916 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyFe, Mn superoxide dismutase (SOD), C-terminal domain 8040813 3000916 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyFe, Mn superoxide dismutase (SOD), N-terminal domain 8040811 3000794 SCOP2B (2022-06-29)
ASCOP2 FamilyFe, Mn superoxide dismutase (SOD), N-terminal domain 8028432 4000630 SCOP2 (2022-06-29)
ASCOP2 FamilyFe, Mn superoxide dismutase (SOD), C-terminal domain 8028434 4001146 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyFe, Mn superoxide dismutase (SOD), N-terminal domain 8040811 3000794 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyFe, Mn superoxide dismutase (SOD), C-terminal domain 8040813 3000916 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
De1uerD1 A: C-terminal subdomain in Lon-related proteases catalytic domainsX: C-terminal subdomain in Lon-related proteases catalytic domainsH: C-terminal subdomain in Lon-related proteases catalytic domainsT: Propep_M14F:ECOD (20:10:01)
De1uerD2 A: C-terminal subdomain in Lon-related proteases catalytic domainsX: C-terminal subdomain in Lon-related proteases catalytic domainsH: C-terminal subdomain in Lon-related proteases catalytic domainsT: NTP_transf_2, PAP_NTPaseF:ECOD (20:10:01)
Ce1uerC2 A: Fe,Mn superoxide dismutase (SOD)-CX: Fe,Mn superoxide dismutase (SOD)-CH: Fe,Mn superoxide dismutase (SOD)-CT: Sod_Fe_CF:ECOD (20:10:01)
Ce1uerC1 A: C-terminal subdomain in Lon-related proteases catalytic domainsX: C-terminal subdomain in Lon-related proteases catalytic domainsH: C-terminal subdomain in Lon-related proteases catalytic domainsT: Propep_M14F:ECOD (20:10:01)
Be1uerB1 A: C-terminal subdomain in Lon-related proteases catalytic domainsX: C-terminal subdomain in Lon-related proteases catalytic domainsH: C-terminal subdomain in Lon-related proteases catalytic domainsT: Propep_M14F:ECOD (20:10:01)
Be1uerB2 A: C-terminal subdomain in Lon-related proteases catalytic domainsX: C-terminal subdomain in Lon-related proteases catalytic domainsH: C-terminal subdomain in Lon-related proteases catalytic domainsT: NTP_transf_2, PAP_NTPaseF:ECOD (20:10:01)
Ae1uerA1 A: C-terminal subdomain in Lon-related proteases catalytic domainsX: C-terminal subdomain in Lon-related proteases catalytic domainsH: C-terminal subdomain in Lon-related proteases catalytic domainsT: Propep_M14F:ECOD (20:10:01)
Ae1uerA2 A: C-terminal subdomain in Lon-related proteases catalytic domainsX: C-terminal subdomain in Lon-related proteases catalytic domainsH: C-terminal subdomain in Lon-related proteases catalytic domainsT: NTP_transf_2, PAP_NTPaseF:ECOD (20:10:01)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D
PF00081Iron/manganese superoxide dismutases, alpha-hairpin domain (Sod_Fe_N)Iron/manganese superoxide dismutases, alpha-hairpin domainsuperoxide dismutases (SODs) catalyse the conversion of superoxide radicals to hydrogen peroxide and molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the Mn/Fe-binding family is one. In humans, there is a cytoplas ...superoxide dismutases (SODs) catalyse the conversion of superoxide radicals to hydrogen peroxide and molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the Mn/Fe-binding family is one. In humans, there is a cytoplasmic Cu/Zn SOD, and a mitochondrial Mn/Fe SOD. N-terminal domain is a long alpha antiparallel hairpin. A small fragment of YTRE_LEPBI matches well - sequencing error?
Domain
A, B, C, D
PF02777Iron/manganese superoxide dismutases, C-terminal domain (Sod_Fe_C)Iron/manganese superoxide dismutases, C-terminal domainsuperoxide dismutases (SODs) catalyse the conversion of superoxide radicals to hydrogen peroxide and molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the Mn/Fe-binding family is one. In humans, there is a cytoplas ...superoxide dismutases (SODs) catalyse the conversion of superoxide radicals to hydrogen peroxide and molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the Mn/Fe-binding family is one. In humans, there is a cytoplasmic Cu/Zn SOD, and a mitochondrial Mn/Fe SOD. C-terminal domain is a mixed alpha/beta fold.
Domain