1UX6
Structure of a thrombospondin C-terminal fragment reveals a novel calcium core in the type 3 repeats
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1ux6a1 | All beta proteins | Concanavalin A-like lectins/glucanases | Concanavalin A-like lectins/glucanases | Thrombospondin C-terminal domain | Thrombospondin C-terminal domain | HUMAN (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
A | d1ux6a2 | Small proteins | TSP type-3 repeat | TSP type-3 repeat | TSP type-3 repeat | Thrombospondin-1 | HUMAN (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Thrombospondin C-terminal domain | 8022884 | 4000842 | SCOP2 (2022-06-29) |
A | SCOP2 Family | TSP type-3 repeat | 8022887 | 4001888 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Concanavalin A-like lectins/glucanases | 8035264 | 3000120 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | TSP type-3 repeat | 8035267 | 3000505 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | TSP_C | e1ux6A1 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Concanavalin A-like lectins/glucanases | F: TSP_C | ECOD (1.6) |
A | TSP_3 | e1ux6A2 | A: few secondary structure elements | X: TSP type-3 repeat (From Topology) | H: TSP type-3 repeat (From Topology) | T: TSP type-3 repeat | F: TSP_3 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 4.10.1080.10 | Few Secondary Structures | Irregular | TSP type-3 repeat | TSP type-3 repeat | CATH (4.3.0) |
A | 2.60.120.200 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02412 | Thrombospondin type 3 repeat (TSP_3) | Thrombospondin type 3 repeat | The thrombospondin repeat is a short aspartate rich repeat which binds to calcium ions. The repeat was initially identified in thrombospondin proteins that contained 7 of these repeats [1]. The repeat lacks defined secondary structure [2]. | Domain | |
PF05735 | Thrombospondin C-terminal region (TSP_C) | Thrombospondin C-terminal region | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR000884 | Thrombospondin type-1 (TSP1) repeat | Repeat | |
IPR036383 | Thrombospondin type-1 (TSP1) repeat superfamily | Homologous Superfamily | |
IPR003367 | Thrombospondin, type 3-like repeat | Repeat | |
IPR001881 | EGF-like calcium-binding domain | Domain | |
IPR028974 | TSP type-3 repeat | Homologous Superfamily | |
IPR000742 | EGF-like domain | Domain | |
IPR024731 | EGF domain | Domain | |
IPR017897 | Thrombospondin, type 3 repeat | Repeat | |
IPR013320 | Concanavalin A-like lectin/glucanase domain superfamily | Homologous Superfamily | |
IPR048287 | Thrombospondin-like, N-terminal domain | Domain | |
IPR008859 | Thrombospondin, C-terminal | Domain | |
IPR001007 | VWFC domain | Domain |