Annotations: 1VMF

CRYSTAL STRUCTURE OF a YBJQ-LIKE FOLD PROTEIN OF UNKNOWN FUNCTION (BH3498) FROM BACILLUS HALODURANS AT 1.46 A RESOLUTION

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1vmfa1	Alpha and beta proteins (a+b)	YjbQ-like	YjbQ-like	YjbQ-like	Hypothetical protein BH3498	(Halalkalibacterium halodurans ) [TaxId: 86665 ],	SCOPe (2.08)
A	d1vmfa2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Halalkalibacterium halodurans ) [TaxId: 86665 ],	SCOPe (2.08)
B	d1vmfb1	Alpha and beta proteins (a+b)	YjbQ-like	YjbQ-like	YjbQ-like	Hypothetical protein BH3498	(Halalkalibacterium halodurans ) [TaxId: 86665 ],	SCOPe (2.08)
B	d1vmfb2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Halalkalibacterium halodurans ) [TaxId: 86665 ],	SCOPe (2.08)
C	d1vmfc1	Alpha and beta proteins (a+b)	YjbQ-like	YjbQ-like	YjbQ-like	Hypothetical protein BH3498	(Halalkalibacterium halodurans ) [TaxId: 86665 ],	SCOPe (2.08)
C	d1vmfc2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Halalkalibacterium halodurans ) [TaxId: 86665 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	YjbQ-like	8030706	4002602	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	YjbQ-like	8043085	3001472	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	YjbQ-like	8043085	3001472	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	YjbQ-like	8043085	3001472	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Nup35_RRM	e1vmfA1	A: beta barrels	X: ETN0001 domain-like	H: Rpp14/Pop5-like	T: Rpp14/Pop5-like	F: Nup35_RRM	ECOD (v294.2)
B	Nup35_RRM	e1vmfB1	A: beta barrels	X: ETN0001 domain-like	H: Rpp14/Pop5-like	T: Rpp14/Pop5-like	F: Nup35_RRM	ECOD (v294.2)
C	Nup35_RRM	e1vmfC1	A: beta barrels	X: ETN0001 domain-like	H: Rpp14/Pop5-like	T: Rpp14/Pop5-like	F: Nup35_RRM	ECOD (v294.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.60.120.460	Mainly Beta	Sandwich	Jelly Rolls	YjbQ-like	CATH (4.3.0)
B	2.60.120.460	Mainly Beta	Sandwich	Jelly Rolls	YjbQ-like	CATH (4.3.0)
C	2.60.120.460	Mainly Beta	Sandwich	Jelly Rolls	YjbQ-like	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C	PF01894	UPF0047 protein YjbQ-like (YjbQ)	UPF0047 protein YjbQ-like	This family includes YjbQ from Escherichia coli, its orthologue from Pyrococcus furiosus and similar sequences. These proteins have been shown to have sufficient thiamine phosphate synthase activity to complement thiE mutants. However, it is presumed ...	This family includes YjbQ from Escherichia coli, its orthologue from Pyrococcus furiosus and similar sequences. These proteins have been shown to have sufficient thiamine phosphate synthase activity to complement thiE mutants. However, it is presumed that this is a secondary activity, and the primary function of the YjbQ family enzyme remains unknown [1, 2].	Domain

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR035917	YjbQ-like superfamily	Homologous Superfamily
A, B, C	IPR001602	UPF0047 protein YjbQ-like	Family

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