1WY9 | pdb_00001wy9

Crystal structure of microglia-specific protein, Iba1

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	zf-FPG_IleRS	e1wy9A1	A: a/b three-layered sandwiches	X: Globin-like	H: Globin-like	T: Globin-like	F: zf-FPG_IleRS	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.238.10	Mainly Alpha	Orthogonal Bundle	Recoverin	domain 1	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Allograft inflammatory factor 1	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding cytoskeletal protein binding actin binding protein-containing complex binding protein binding actin filament binding	regulation of biosynthetic process regulation of nitric oxide biosynthetic process regulation of biological process regulation of cellular process biological regulation positive regulation of biological process reactive nitrogen species metabolic process nitric oxide metabolic process positive regulation of metabolic process nitric oxide biosynthetic process biosynthetic process positive regulation of biosynthetic process cellular process metabolic process regulation of biosynthetic process regulation of nitric oxide biosynthetic process regulation of biological process regulation of cellular process biological regulation positive regulation of biological process reactive nitrogen species metabolic process nitric oxide metabolic process positive regulation of metabolic process nitric oxide biosynthetic process biosynthetic process positive regulation of biosynthetic process cellular process metabolic process regulation of nitric oxide metabolic process positive regulation of nitric oxide biosynthetic process regulation of metabolic process positive regulation of cellular process multicellular organismal process positive regulation of macromolecule biosynthetic process regulation of fibroblast growth factor production cytokine production regulation of cytokine production regulation of multicellular organismal process positive regulation of macromolecule metabolic process positive regulation of fibroblast growth factor production fibroblast growth factor production regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of gene expression positive regulation of gene expression positive regulation of multicellular organismal process regulation of macromolecule biosynthetic process macromolecule metabolic process positive regulation of cytokine production membrane organization import into cell transport establishment of localization vesicle-mediated transport cellular component organization localization phagocytosis, engulfment membrane invagination phagocytosis cellular component organization or biogenesis endocytosis plasma membrane invagination negative regulation of programmed cell death regulation of apoptotic process negative regulation of biological process regulation of programmed cell death cell death negative regulation of apoptotic process negative regulation of cellular process apoptotic process programmed cell death interleukin-6 production positive regulation of interleukin-6 production regulation of interleukin-6 production chemotaxis positive regulation of locomotion response to stimulus regulation of response to external stimulus response to external stimulus regulation of chemotaxis positive regulation of chemotaxis positive regulation of response to stimulus positive regulation of response to external stimulus taxis regulation of response to stimulus response to chemical regulation of locomotion locomotion regulation of muscle adaptation system process regulation of system process positive regulation of muscle hyperplasia muscle hyperplasia muscle system process regulation of muscle system process muscle adaptation positive regulation of muscle adaptation regulation of muscle hyperplasia protein polymerization actin polymerization or depolymerization actin filament polymerization actin cytoskeleton organization protein-containing complex organization actin filament organization cellular component biogenesis organelle organization cellular component assembly protein-containing complex assembly actin filament-based process supramolecular fiber organization cytoskeleton organization negative regulation of cell population proliferation cell population proliferation regulation of smooth muscle cell proliferation smooth muscle cell proliferation negative regulation of smooth muscle cell proliferation regulation of cell population proliferation muscle cell proliferation cellular response to stimulus regulation of cell motility positive regulation of smooth muscle cell chemotaxis regulation of smooth muscle cell chemotaxis regulation of smooth muscle cell migration positive regulation of smooth muscle cell migration positive regulation of cell migration muscle cell migration positive regulation of cell motility smooth muscle cell chemotaxis regulation of cell migration cell migration cell motility cell chemotaxis smooth muscle cell migration cellular response to chemical stimulus negative regulation of locomotion negative regulation of chemotaxis negative regulation of cell migration negative regulation of response to stimulus negative regulation of smooth muscle cell chemotaxis negative regulation of smooth muscle cell migration negative regulation of response to external stimulus negative regulation of cell motility parallel actin filament bundle assembly actin filament bundle organization actin filament bundle assembly response to oxidative stress cellular response to stress response to stress cellular response to oxidative stress cellular response to chemical stress regulation of cell cycle phase transition cell cycle phase transition regulation of cell cycle G1/S phase transition cell cycle G1/S phase transition mitotic cell cycle regulation of mitotic cell cycle positive regulation of mitotic cell cycle phase transition positive regulation of cell cycle process positive regulation of mitotic cell cycle cell cycle regulation of cell cycle cell cycle process positive regulation of G1/S transition of mitotic cell cycle regulation of cell cycle process positive regulation of cell cycle regulation of mitotic cell cycle phase transition positive regulation of cell cycle G1/S phase transition mitotic cell cycle process regulation of G1/S transition of mitotic cell cycle positive regulation of cell cycle phase transition G1/S transition of mitotic cell cycle mitotic cell cycle phase transition positive regulation of cell population proliferation small GTPase-mediated signal transduction signaling Rac protein signal transduction intracellular signal transduction cell communication intracellular signaling cassette signal transduction regulation of chemokine production chemokine production positive regulation of chemokine production biological process involved in interspecies interaction between organisms immune response response to other organism defense response response to type II interferon response to cytokine defense response to symbiont cellular response to type II interferon response to biotic stimulus response to peptide immune system process defense response to other organism innate immune response cellular response to cytokine stimulus response to external biotic stimulus plasma membrane bounded cell projection organization ruffle organization cell projection organization plasma membrane bounded cell projection assembly ruffle assembly cell projection assembly positive regulation of mononuclear cell migration regulation of immune system process regulation of mononuclear cell migration positive regulation of immune system process regulation of leukocyte migration positive regulation of leukocyte migration leukocyte migration mononuclear cell migration positive regulation of monocyte chemotaxis regulation of monocyte chemotaxis myeloid leukocyte migration regulation of leukocyte chemotaxis positive regulation of leukocyte chemotaxis monocyte chemotaxis leukocyte chemotaxis regulation of lymphocyte migration positive regulation of lymphocyte migration positive regulation of T cell migration lymphocyte migration regulation of T cell migration T cell migration actin crosslink formation positive regulation of smooth muscle cell proliferation inflammatory response negative regulation of metabolic process negative regulation of gene expression negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process negative regulation of macromolecule metabolic process regulation of leukocyte activation regulation of cell activation positive regulation of cell activation T cell activation lymphocyte proliferation positive regulation of leukocyte activation regulation of leukocyte proliferation positive regulation of T cell activation positive regulation of lymphocyte proliferation positive regulation of T cell proliferation mononuclear cell proliferation regulation of leukocyte cell-cell adhesion positive regulation of leukocyte proliferation positive regulation of leukocyte cell-cell adhesion lymphocyte activation leukocyte proliferation leukocyte cell-cell adhesion leukocyte activation positive regulation of cell-cell adhesion positive regulation of lymphocyte activation cell adhesion cell-cell adhesion positive regulation of mononuclear cell proliferation regulation of cell-cell adhesion T cell proliferation regulation of lymphocyte proliferation positive regulation of cell adhesion regulation of cell adhesion cell activation regulation of T cell activation regulation of T cell proliferation regulation of mononuclear cell proliferation regulation of lymphocyte activation myeloid leukocyte activation macrophage activation leukocyte activation involved in inflammatory response microglial cell activation glial cell activation neuroinflammatory response	cell projection cellular anatomical structure cell leading edge plasma membrane bounded cell projection lamellipodium somatodendritic compartment cell body perikaryon neuronal cell body ruffle plasma membrane membrane leading edge membrane cell periphery cell projection cellular anatomical structure cell leading edge plasma membrane bounded cell projection lamellipodium somatodendritic compartment cell body perikaryon neuronal cell body ruffle plasma membrane membrane leading edge membrane cell periphery ruffle membrane plasma membrane region cell projection membrane intracellular anatomical structure cytoplasm cytosol perinuclear region of cytoplasm polymeric cytoskeletal fiber actin filament intracellular membraneless organelle actin cytoskeleton intracellular organelle cytoskeleton organelle membraneless organelle supramolecular fiber supramolecular polymer supramolecular complex phagocytic cup membrane-bounded organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR049025	Allograft inflammatory factor 1-like, EF-hand domain pair	Domain
A	IPR002048	EF-hand domain	Domain
A	IPR011992	EF-hand domain pair	Homologous Superfamily
A	IPR042433	Allograft inflammatory factor 1	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.