1WZC | pdb_00001wzc

Crystal structure of Pyrococcus horikoshii mannosyl-3-phosphoglycerate phosphatase complexed with MG2+ and phosphate

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d1wzcb2	Alpha and beta proteins (a/b)	HAD-like	HAD-like	Predicted hydrolases Cof	Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP)	(Pyrococcus horikoshii ) [TaxId: 53953 ],	SCOPe (2.08)
B	d1wzcb3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Pyrococcus horikoshii ) [TaxId: 53953 ],	SCOPe (2.08)
A	d1wzca1	Alpha and beta proteins (a/b)	HAD-like	HAD-like	Predicted hydrolases Cof	Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP)	(Pyrococcus horikoshii ) [TaxId: 53953 ],	SCOPe (2.08)
A	d1wzca2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Pyrococcus horikoshii ) [TaxId: 53953 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2 Family	Predicted hydrolases Cof	8021063	4002994	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	HAD-like	8033443	3001890	SCOP2 (2022-06-29)
A	SCOP2B Superfamily	HAD-like	8033443	3001890	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B		e1wzcB1	A: P-loop domains-like	X: P-loop domains-related	H: P-loop containing nucleoside triphosphate hydrolases	T: ORC2	F:	ECOD (20:10:01)
A		e1wzcA3	A: P-loop domains-like	X: HAD domain-related	H: HAD-like	T: Hydrolase_3	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.40.50.1000	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	HAD superfamily/HAD-like	CATH (4.3.0)
B	3.30.980.20	Alpha Beta	2-Layer Sandwich	Threonyl-tRNA Synthetase	Chain A, domain 2	CATH (4.3.0)
A	3.40.50.1000	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	HAD superfamily/HAD-like	CATH (4.3.0)
A	3.30.980.20	Alpha Beta	2-Layer Sandwich	Threonyl-tRNA Synthetase	Chain A, domain 2	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Mannosyl-3-phosphoglycerate phosphatase	cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding phosphoric ester hydrolase activity mannosyl-3-phosphoglycerate phosphatase activity hydrolase activity, acting on ester bonds phosphatase activity hydrolase activity catalytic activity	carbohydrate derivative biosynthetic process carbohydrate metabolic process glycosyl compound biosynthetic process small molecule biosynthetic process oxoacid metabolic process glycoside metabolic process carbohydrate biosynthetic process carboxylic acid metabolic process carbohydrate derivative metabolic process primary metabolic process organic acid biosynthetic process organic acid metabolic process carboxylic acid biosynthetic process glycoside biosynthetic process mannosylglycerate biosynthetic process carbohydrate derivative biosynthetic process carbohydrate metabolic process glycosyl compound biosynthetic process small molecule biosynthetic process oxoacid metabolic process glycoside metabolic process carbohydrate biosynthetic process carboxylic acid metabolic process carbohydrate derivative metabolic process primary metabolic process organic acid biosynthetic process organic acid metabolic process carboxylic acid biosynthetic process glycoside biosynthetic process mannosylglycerate biosynthetic process biosynthetic process small molecule metabolic process metabolic process cellular process mannosylglycerate metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR012815	Mannosyl-3-phosphoglycerate phosphatase	Family
A, B	IPR036412	HAD-like superfamily	Homologous Superfamily
A, B	IPR023214	HAD superfamily	Homologous Superfamily
A, B	IPR006381	HAD-superfamily hydrolase, superfamily IIB, MPGP	Family
A, B	IPR006379	HAD-superfamily hydrolase, subfamily IIB	Family
A, B	IPR033980	Mannosyl-3-phosphoglycerate phosphatase, thermophiles	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.