Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
D [auth 3]d1yit31 Small proteins Rubredoxin-like Zn-binding ribosomal proteins Ribosomal protein L44e Ribosomal protein L44e (Haloarcula marismortui ) [TaxId: 2238 ], SCOPe (2.08)
K [auth E]d1yite1 Alpha and beta proteins (a+b) Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6 (Haloarcula marismortui ) [TaxId: 2238 ], SCOPe (2.08)
Q [auth K]d1yitk1 All beta proteins Ribosomal protein L14 Ribosomal protein L14 Ribosomal protein L14 Ribosomal protein L14 (Haloarcula marismortui ) [TaxId: 2238 ], SCOPe (2.08)
U [auth O]d1yito1 Alpha and beta proteins (a/b) Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e Ribosomal protein L18e (Haloarcula marismortui ) [TaxId: 2238 ], SCOPe (2.08)
V [auth P]d1yitp1 All alpha proteins Ribosomal protein L19 (L19e) Ribosomal protein L19 (L19e) Ribosomal protein L19 (L19e) Ribosomal protein L19 (L19e) (Haloarcula marismortui ) [TaxId: 2238 ], SCOPe (2.08)
EA [auth Y]d1yity1 Alpha and beta proteins (a/b) Barstar-like Ribosomal protein L32e Ribosomal protein L32e Ribosomal protein L32e (Haloarcula marismortui ) [TaxId: 2238 ], SCOPe (2.08)
J [auth D]d1yitd1 Alpha and beta proteins (a+b) RL5-like RL5-like Ribosomal protein L5 Ribosomal protein L5 (Haloarcula marismortui ) [TaxId: 2238 ], SCOPe (2.08)
L [auth F]d1yitf1 Alpha and beta proteins (a+b) Bacillus chorismate mutase-like L30e-like L30e/L7ae ribosomal proteins Ribosomal protein L7ae (Haloarcula marismortui ) [TaxId: 2238 ], SCOPe (2.08)
M [auth G]d1yitg1 Peptides Ribosomal protein L10 Ribosomal protein L10 Ribosomal protein L10 Ribosomal protein L10 (Haloarcula marismortui ) [TaxId: 2238 ], SCOPe (2.08)
N [auth H]d1yith1 Alpha and beta proteins (a+b) alpha/beta-Hammerhead Ribosomal protein L16p/L10e Ribosomal protein L10e Ribosomal protein L10e (Haloarcula marismortui ) [TaxId: 2238 ], SCOPe (2.08)
O [auth I]d1yiti1 All alpha proteins DNA/RNA-binding 3-helical bundle Ribosomal protein L11, C-terminal domain Ribosomal protein L11, C-terminal domain Ribosomal protein L11, C-terminal domain (Haloarcula marismortui ) [TaxId: 2238 ], SCOPe (2.08)
P [auth J]d1yitj1 Alpha and beta proteins (a/b) Ribosomal protein L13 Ribosomal protein L13 Ribosomal protein L13 Ribosomal protein L13 (Haloarcula marismortui ) [TaxId: 2238 ], SCOPe (2.08)
R [auth L]d1yitl1 Alpha and beta proteins (a/b) Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e Ribosomal protein L15 (L15p) (Haloarcula marismortui ) [TaxId: 2238 ], SCOPe (2.08)
S [auth M]d1yitm1 Alpha and beta proteins (a+b) Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e L15e Ribosomal protein L15e (Haloarcula marismortui ) [TaxId: 2238 ], SCOPe (2.08)
B [auth 1]d1yit11 Small proteins Rubredoxin-like Zn-binding ribosomal proteins Ribosomal protein L37e Ribosomal protein L37e (Haloarcula marismortui ) [TaxId: 2238 ], SCOPe (2.08)
T [auth N]d1yitn1 Alpha and beta proteins (a/b) Ribonuclease H-like motif Translational machinery components Ribosomal protein L18 and S11 Ribosomal protein L18 (L18p) (Haloarcula marismortui ) [TaxId: 2238 ], SCOPe (2.08)
W [auth Q]d1yitq1 All beta proteins SH3-like barrel Translation proteins SH3-like domain Ribosomal proteins L24p and L21e Ribosomal proteins L21e (Haloarcula marismortui ) [TaxId: 2238 ], SCOPe (2.08)
X [auth R]d1yitr1 Alpha and beta proteins (a+b) Ribosomal protein L22 Ribosomal protein L22 Ribosomal protein L22 Ribosomal protein L22 (Haloarcula marismortui ) [TaxId: 2238 ], SCOPe (2.08)
Y [auth S]d1yits1 Alpha and beta proteins (a+b) Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e L23p Ribosomal protein L23 (Haloarcula marismortui ) [TaxId: 2238 ], SCOPe (2.08)
Z [auth T]d1yitt1 All beta proteins SH3-like barrel Translation proteins SH3-like domain Ribosomal proteins L24p and L21e Ribosomal proteins L24 (L24p) (Haloarcula marismortui ) [TaxId: 2238 ], SCOPe (2.08)
AA [auth U]d1yitu1 Small proteins Glucocorticoid receptor-like (DNA-binding domain) Glucocorticoid receptor-like (DNA-binding domain) Ribosomal protein L24e Ribosomal protein L24e (Haloarcula marismortui ) [TaxId: 2238 ], SCOPe (2.08)
BA [auth V]d1yitv1 All alpha proteins Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p) (Haloarcula marismortui ) [TaxId: 2238 ], SCOPe (2.08)
CA [auth W]d1yitw1 Alpha and beta proteins (a+b) Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Archaeal L30 (L30a) (Haloarcula marismortui ) [TaxId: 2238 ], SCOPe (2.08)
C [auth 2]d1yit21 All alpha proteins Non-globular all-alpha subunits of globular proteins Ribosomal protein L39e Ribosomal protein L39e Ribosomal protein L39e (Haloarcula marismortui ) [TaxId: 2238 ], SCOPe (2.08)
DA [auth X]d1yitx1 Alpha and beta proteins (a+b) Ribosomal protein L31e Ribosomal protein L31e Ribosomal protein L31e Ribosomal protein L31e (Haloarcula marismortui ) [TaxId: 2238 ], SCOPe (2.08)
FA [auth Z]d1yitz1 Small proteins Rubredoxin-like Zn-binding ribosomal proteins Ribosomal protein L37ae Ribosomal protein L37ae (Haloarcula marismortui ) [TaxId: 2238 ], SCOPe (2.08)
G [auth A]d1yita1 All beta proteins SH3-like barrel Translation proteins SH3-like domain C-terminal domain of ribosomal protein L2 C-terminal domain of ribosomal protein L2 (Haloarcula marismortui ) [TaxId: 2238 ], SCOPe (2.08)
G [auth A]d1yita2 All beta proteins OB-fold Nucleic acid-binding proteins Cold shock DNA-binding domain-like N-terminal domain of ribosomal protein L2 (Haloarcula marismortui ) [TaxId: 2238 ], SCOPe (2.08)
H [auth B]d1yitb1 All beta proteins Reductase/isomerase/elongation factor common domain Translation proteins Ribosomal protein L3 Ribosomal protein L3 (Haloarcula marismortui ) [TaxId: 2238 ], SCOPe (2.08)
I [auth C]d1yitc1 Alpha and beta proteins (a/b) Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4 (Haloarcula marismortui ) [TaxId: 2238 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
D [auth 3]SCOP2B SuperfamilyZn-binding ribosomal proteins 8032610 3001320 SCOP2B (2022-06-29)
K [auth E]SCOP2B SuperfamilyRibosomal protein L6 8032623 3000724 SCOP2B (2022-06-29)
K [auth E]SCOP2B SuperfamilyRibosomal protein L6 8032625 3000724 SCOP2B (2022-06-29)
Q [auth K]SCOP2B Superfamily50S Ribosomal protein L14-like 8034442 3000433 SCOP2B (2022-06-29)
U [auth O]SCOP2B SuperfamilyRibosomal proteins L15p and L18e 8032640 3001045 SCOP2B (2022-06-29)
V [auth P]SCOP2B SuperfamilyRibosomal protein L19 (L19e) 8032641 3000890 SCOP2B (2022-06-29)
EA [auth Y]SCOP2B SuperfamilyRibosomal protein L32e 8032660 3000982 SCOP2B (2022-06-29)
J [auth D]SCOP2B SuperfamilyRL5-like 8032620 3001709 SCOP2B (2022-06-29)
L [auth F]SCOP2B SuperfamilyL30e-like 8032628 3001739 SCOP2B (2022-06-29)
N [auth H]SCOP2B SuperfamilyRibosomal protein L16p/L10e 8035022 3000884 SCOP2B (2022-06-29)
O [auth I]SCOP2B SuperfamilyRibosomal protein L11, C-terminal domain 8032631 3001186 SCOP2B (2022-06-29)
P [auth J]SCOP2B SuperfamilyRibosomal protein L13 8032632 3001134 SCOP2B (2022-06-29)
R [auth L]SCOP2B SuperfamilyRibosomal proteins L15p and L18e 8032635 3001045 SCOP2B (2022-06-29)
S [auth M]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8032636 3000210 SCOP2B (2022-06-29)
B [auth 1]SCOP2B SuperfamilyZn-binding ribosomal proteins 8032609 3001320 SCOP2B (2022-06-29)
T [auth N]SCOP2B SuperfamilyTranslational machinery components 8032638 3000571 SCOP2B (2022-06-29)
W [auth Q]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8032644 3000334 SCOP2B (2022-06-29)
X [auth R]SCOP2B SuperfamilyRibosomal protein L22 8032645 3001078 SCOP2B (2022-06-29)
Y [auth S]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8032646 3000210 SCOP2B (2022-06-29)
Z [auth T]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8032648 3000334 SCOP2B (2022-06-29)
AA [auth U]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain) 8032651 3000068 SCOP2B (2022-06-29)
BA [auth V]SCOP2B SuperfamilyRibosomal protein L29 (L29p) 8032653 3000713 SCOP2B (2022-06-29)
CA [auth W]SCOP2B SuperfamilyRibosomal protein L30p/L7e 8032657 3001378 SCOP2B (2022-06-29)
C [auth 2]SCOP2B SuperfamilyRibosomal protein L39e 8034428 3001756 SCOP2B (2022-06-29)
DA [auth X]SCOP2B SuperfamilyRibosomal protein L31e 8032659 3000699 SCOP2B (2022-06-29)
FA [auth Z]SCOP2B SuperfamilyZn-binding ribosomal proteins 8032661 3001320 SCOP2B (2022-06-29)
G [auth A]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8032612 3000334 SCOP2B (2022-06-29)
G [auth A]SCOP2B SuperfamilyNucleic acid-binding proteins 8032613 3000135 SCOP2B (2022-06-29)
H [auth B]SCOP2B SuperfamilyTranslational proteins 8032615 3000811 SCOP2B (2022-06-29)
I [auth C]SCOP2B SuperfamilyRibosomal protein L4 8032619 3001146 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
D [auth 3]Ribosomal_L44e1yit31 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L44ECOD (1.6)
K [auth E]Ribosomal_L6_2e1yitE2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6_2ECOD (1.6)
K [auth E]Ribosomal_L6e1yitE1 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6ECOD (1.6)
Q [auth K]Ribosomal_L14e1yitK1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_L14ECOD (1.6)
U [auth O]Ribosomal_L18e1yitO1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: Ribosomal_L18ECOD (1.6)
V [auth P]Ribosomal_L19e_Ne1yitP1 A: alpha arraysX: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) N-terminal domainF: Ribosomal_L19e_NECOD (1.6)
V [auth P]Ribosomal_L19e_Ce1yitP2 A: alpha bundlesX: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) C-terminal domainF: Ribosomal_L19e_CECOD (1.6)
EA [auth Y]Ribosomal_L32ee1yitY1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L32e (From Topology)T: Ribosomal protein L32eF: Ribosomal_L32eECOD (1.6)
J [auth D]Ribosomal_L5_Ce1yitD1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: Ribosomal_L5_CECOD (1.6)
L [auth F]Ribosomal_L7Ae_1e1yitF1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: Ribosomal_L7Ae_1ECOD (1.6)
M [auth G]rplP0_likee1yitG1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein L10-like (From Topology)T: Ribosomal protein L10-likeF: rplP0_likeECOD (1.6)
N [auth H]Ribosomal_L16e1yitH1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: Ribosomal_L16ECOD (1.6)
O [auth I]Ribosomal_L11e1yitI1 A: alpha arraysX: HTHH: HTHT: Ribosomal protein L11, C-terminal domainF: Ribosomal_L11ECOD (1.6)
P [auth J]Ribosomal_L13e1yitJ1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: Ribosomal_L13ECOD (1.6)
R [auth L]Ribosomal_L18e1yitL1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: Ribosomal_L18ECOD (1.6)
S [auth M]Ribosomal_L15ee1yitM1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L15eECOD (1.6)
B [auth 1]Ribosomal_L37ee1yit11 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L37eECOD (1.6)
T [auth N]Ribosomal_L5ee1yitN1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_L5eECOD (1.6)
W [auth Q]Ribosomal_L21ee1yitQ1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L21eECOD (1.6)
X [auth R]Ribosomal_L22e1yitR1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: Ribosomal_L22ECOD (1.6)
Y [auth S]Ribosomal_L23_1e1yitS1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L23_1ECOD (1.6)
Z [auth T]Ribosomal_L26e1yitT1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L26ECOD (1.6)
AA [auth U]Ribosomal_L24ee1yitU1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_L24eECOD (1.6)
BA [auth V]Ribosomal_L29e1yitV1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: Ribosomal_L29ECOD (1.6)
CA [auth W]Ribosomal_L30_1e1yitW1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: Ribosomal_L30_1ECOD (1.6)
C [auth 2]Ribosomal_L39e1yit21 A: extended segmentsX: Ribosomal protein L39e (From Topology)H: Ribosomal protein L39e (From Topology)T: Ribosomal protein L39eF: Ribosomal_L39ECOD (1.6)
DA [auth X]Ribosomal_L31ee1yitX1 A: a+b two layersX: Ribosomal protein L31e-likeH: Ribosomal protein L31e/gp120 outer domain (From Topology)T: Ribosomal protein L31e/gp120 outer domainF: Ribosomal_L31eECOD (1.6)
FA [auth Z]Ribosomal_L37aee1yitZ1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L37aeECOD (1.6)
G [auth A]Ribosomal_L2_1e1yitA1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_L2_1ECOD (1.6)
G [auth A]Ribosomal_L2_C_2e1yitA2 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L2_C_2ECOD (1.6)
H [auth B]Ribosomal_L3e1yitB1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (1.6)
I [auth C]Ribosomal_L4e1yitC1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: Ribosomal_L4ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
D [auth 3]3.10.450.80 Alpha Beta Roll Nuclear Transport Factor 2 Chain: A,CATH (4.3.0)
K [auth E]3.90.930.12 Alpha Beta Alpha-Beta Complex Outer Surface Protein A domain 3CATH (4.3.0)
Q [auth K]2.40.150.20 Mainly Beta Beta Barrel Ribosomal Protein L14 Ribosomal protein L14/L23CATH (4.3.0)
U [auth O]3.100.10.10 Alpha Beta Ribosomal Protein L15 Chain: K domain 2CATH (4.3.0)
V [auth P]1.10.1650.10 Mainly Alpha Orthogonal Bundle 50s Ribosomal Protein L19e, Chain O, domain 1 CATH (4.3.0)
V [auth P]1.20.5.560 Mainly Alpha Up-down Bundle Single alpha-helices involved in coiled-coils or other helix-helix interfaces Single Heli x binCATH (4.3.0)
V [auth P]1.10.1200.60 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein Chain ACATH (4.3.0)
J [auth D]3.30.1440.10 Alpha Beta 2-Layer Sandwich 50s Ribosomal Protein L5 Chain: A,CATH (4.3.0)
L [auth F]3.30.1330.30 Alpha Beta 2-Layer Sandwich 60s Ribosomal Protein L30 Chain: ACATH (4.3.0)
N [auth H]3.90.1170.10 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase domain 3CATH (4.3.0)
O [auth I]1.10.10.250 Mainly Alpha Orthogonal Bundle Arc Repressor Mutant, subunit A Ribosomal protein L11/L12, C-terminal domainCATH (4.3.0)
P [auth J]3.90.1180.10 Alpha Beta Alpha-Beta Complex Ribosomal Protein L13p Chain: ACATH (4.3.0)
R [auth L]4.10.990.10 Few Secondary Structures Irregular Molecule: Ribosomal Protein L15 Chain: KCATH (4.3.0)
R [auth L]3.100.10.10 Alpha Beta Ribosomal Protein L15 Chain: K domain 2CATH (4.3.0)
S [auth M]3.40.1120.10 Alpha Beta 3-Layer(aba) Sandwich Ribosomal protein L15e Ribosomal protein L15CATH (4.3.0)
B [auth 1]2.20.25.30 Mainly Beta Single Sheet N-terminal domain of TfIIb CATH (4.3.0)
T [auth N]3.30.420.100 Alpha Beta 2-Layer Sandwich Nucleotidyltransferase domain 5CATH (4.3.0)
W [auth Q]2.30.30.70 Mainly Beta Roll SH3 type barrels. Ribosomal protein L21CATH (4.3.0)
X [auth R]3.90.470.10 Alpha Beta Alpha-Beta Complex Ribosomal Protein L22 Chain ACATH (4.3.0)
Y [auth S]3.30.70.330 Alpha Beta 2-Layer Sandwich Alpha-Beta Plaits RRM (RNA recognition motif) domainCATH (4.3.0)
Z [auth T]2.30.30.30 Mainly Beta Roll SH3 type barrels. CATH (4.3.0)
AA [auth U]2.30.170.20 Mainly Beta Roll Ribosomal Protein L24e Chain: TCATH (4.3.0)
BA [auth V]1.10.287.310 Mainly Alpha Orthogonal Bundle Helix Hairpins CATH (4.3.0)
CA [auth W]3.30.1390.20 Alpha Beta 2-Layer Sandwich Ribosomal Protein L30 Chain: A,CATH (4.3.0)
CA [auth W]1.10.15.30 Mainly Alpha Orthogonal Bundle 3-methyladenine DNA Glycosylase II Chain A, domain 3CATH (4.3.0)
C [auth 2]1.10.1620.10 Mainly Alpha Orthogonal Bundle Atp Synthase Epsilon Chain Chain: ICATH (4.3.0)
DA [auth X]3.10.440.10 Alpha Beta Roll Ribosomal Protein L31e Chain: WCATH (4.3.0)
FA [auth Z]2.20.25.30 Mainly Beta Single Sheet N-terminal domain of TfIIb CATH (4.3.0)
G [auth A]2.40.50.140 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) Nucleic acid-binding proteinsCATH (4.3.0)
G [auth A]2.30.30.30 Mainly Beta Roll SH3 type barrels. CATH (4.3.0)
G [auth A]4.10.950.10 Few Secondary Structures Irregular Ribosomal protein L2 domain 3CATH (4.3.0)
H [auth B]4.10.960.10 Few Secondary Structures Irregular Ribosomal protein L3 domain 3CATH (4.3.0)
H [auth B]2.40.30.10 Mainly Beta Beta Barrel Elongation Factor Tu (Ef-tu) domain 3CATH (4.3.0)
H [auth B]3.30.1430.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein L3 Chain: BCATH (4.3.0)
I [auth C]3.40.1370.10 Alpha Beta 3-Layer(aba) Sandwich Ribosomal Protein L4 Chain: ACATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
D [auth 3]PF00935Ribosomal protein L44 (Ribosomal_L44)Ribosomal protein L44- Family
K [auth E]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
Q [auth K]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
U [auth O]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
V [auth P]PF01280Ribosomal protein L19e (Ribosomal_L19e)Ribosomal protein L19e- Family
EA [auth Y]PF01655Ribosomal protein L32 (Ribosomal_L32e)Ribosomal protein L32- Family
J [auth D]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
J [auth D]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
L [auth F]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
N [auth H]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Domain
O [auth I]PF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domain- Domain
P [auth J]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
R [auth L]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
S [auth M]PF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- Family
B [auth 1]PF01907Ribosomal protein L37e (Ribosomal_L37e)Ribosomal protein L37e- Family
T [auth N]PF17144Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e)Ribosomal large subunit proteins 60S L5, and 50S L18- Family
X [auth R]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
Y [auth S]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
Z [auth T]PF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
Z [auth T]PF00467KOW motif (KOW)KOW motif- Family
BA [auth V]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
CA [auth W]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
C [auth 2]PF00832Ribosomal L39 protein (Ribosomal_L39)Ribosomal L39 protein- Family
FA [auth Z]PF01780Ribosomal L37ae protein family (Ribosomal_L37ae)Ribosomal L37ae protein family- Family
G [auth A]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
G [auth A]PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
I [auth C]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
D [auth 3]50S RIBOSOMAL PROTEIN L44E
E [auth 8]VIRGINIAMYCIN S1---
K [auth E]50S RIBOSOMAL PROTEIN L6P
Q [auth K]50S RIBOSOMAL PROTEIN L14P
U [auth O]50S RIBOSOMAL PROTEIN L18E
V [auth P]50S RIBOSOMAL PROTEIN L19E
EA [auth Y]50S RIBOSOMAL PROTEIN L32E
A [auth 0]23S RIBOSOMAL RNA---
J [auth D]50S RIBOSOMAL PROTEIN L5P
L [auth F]50S RIBOSOMAL PROTEIN L7AE
M [auth G]ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG
N [auth H]50S RIBOSOMAL PROTEIN L10E
O [auth I]50S RIBOSOMAL PROTEIN L11P
P [auth J]50S RIBOSOMAL PROTEIN L13P
R [auth L]50S RIBOSOMAL PROTEIN L15P
S [auth M]50S RIBOSOMAL PROTEIN L15E
B [auth 1]50S RIBOSOMAL PROTEIN L37E
T [auth N]50S RIBOSOMAL PROTEIN L18P
W [auth Q]50S RIBOSOMAL PROTEIN L21E
X [auth R]50S RIBOSOMAL PROTEIN L22P
Y [auth S]50S RIBOSOMAL PROTEIN L23P
Z [auth T]50S RIBOSOMAL PROTEIN L24P
AA [auth U]50S RIBOSOMAL PROTEIN L24E
BA [auth V]50S RIBOSOMAL PROTEIN L29P
CA [auth W]50S RIBOSOMAL PROTEIN L30P
C [auth 2]50S RIBOSOMAL PROTEIN L39E
DA [auth X]50S RIBOSOMAL PROTEIN L31E
FA [auth Z]50S RIBOSOMAL PROTEIN L37AE
F [auth 9]5S RIBOSOMAL RNA---
G [auth A]50S RIBOSOMAL PROTEIN L2P
H [auth B]50S RIBOSOMAL PROTEIN L3P
I [auth C]50S RIBOSOMAL PROTEIN L4E

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
D [auth 3]IPR053708Eukaryotic Ribosomal Large Subunit eL42Homologous Superfamily
D [auth 3]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
D [auth 3]IPR000552Large ribosomal subunit protein eL42Family
K [auth E]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
K [auth E]IPR019907Large ribosomal subunit protein uL6, archaeaFamily
K [auth E]IPR002359Large ribosomal subunit protein uL6, conserved site-2Conserved Site
K [auth E]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
K [auth E]IPR000702Large ribosomal subunit protein uL6-likeFamily
Q [auth K]IPR019971Large ribosomal subunit protein uL14, archaealFamily
Q [auth K]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
Q [auth K]IPR000218Large ribosomal subunit protein uL14Family
Q [auth K]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
U [auth O]IPR022947Large ribosomal subunit protein eL18, archaeaFamily
U [auth O]IPR021131Large ribosomal subunit protein uL15/eL18Domain
U [auth O]IPR021132Large ribosomal subunit protein eL18, conserved siteConserved Site
U [auth O]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
U [auth O]IPR000039Large ribosomal subunit protein eL18Family
U [auth O]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
V [auth P]IPR015972Large ribosomal subunit protein eL19, domain 1Homologous Superfamily
V [auth P]IPR015974Large ribosomal subunit protein eL19, domain 3Homologous Superfamily
V [auth P]IPR039547Large ribosomal subunit protein eL19Family
V [auth P]IPR033936Large ribosomal subunit protein eL19, archaealDomain
V [auth P]IPR023638Large ribosomal subunit protein eL19, conserved siteConserved Site
V [auth P]IPR035970Large ribosomal subunit protein eL19 superfamilyHomologous Superfamily
V [auth P]IPR000196Large ribosomal subunit protein eL19 domainDomain
V [auth P]IPR015973Large ribosomal subunit protein eL19, domain 2Homologous Superfamily
EA [auth Y]IPR001515Large ribosomal subunit protein eL32Family
EA [auth Y]IPR018263Large ribosomal subunit protein eL32, conserved siteConserved Site
EA [auth Y]IPR036351Large ribosomal subunit protein eL32 superfamilyHomologous Superfamily
EA [auth Y]IPR023654Large ribosomal subunit protein eL32, archaealFamily
EA [auth Y]IPR010995DNA repair Rad51/transcription factor NusA, alpha-helicalHomologous Superfamily
EA [auth Y]IPR003583Helix-hairpin-helix DNA-binding motif, class 1Domain
J [auth D]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
J [auth D]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
J [auth D]IPR022804Large ribosomal subunit protein uL5, archaealFamily
J [auth D]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
J [auth D]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
J [auth D]IPR002132Large ribosomal subunit protein uL5Family
L [auth F]IPR050257Large ribosomal subunit protein eL8/uL1-likeFamily
L [auth F]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
L [auth F]IPR022481Large ribosomal subunit protein eL8, archaeaFamily
L [auth F]IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
L [auth F]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
L [auth F]IPR018492Ribosomal protein eL8/Nhp2 familyFamily
M [auth G]IPR043141Large ribosomal subunit protein uL10-like domain superfamilyHomologous Superfamily
M [auth G]IPR001790Large ribosomal subunit protein uL10Family
M [auth G]IPR043164Large ribosomal subunit protein uL10-like, insertion domain superfamilyHomologous Superfamily
M [auth G]IPR050323Universal ribosomal protein uL10Family
M [auth G]IPR040637Large ribosomal subunit protein uL10-like, insertion domainDomain
M [auth G]IPR022909Large ribosomal subunit protein uL10, archaeaFamily
N [auth H]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
N [auth H]IPR022981Large ribosomal subunit protein uL16, archaeaFamily
N [auth H]IPR001197Large ribosomal subunit protein uL16, eukaryotes/archaeaFamily
N [auth H]IPR016180Large ribosomal subunit protein uL16 domainDomain
N [auth H]IPR047873Large ribosomal subunit protein uL16Family
N [auth H]IPR018255Large ribosomal subunit protein uL16, conserved site, eukaryotes/archaeaConserved Site
O [auth I]IPR020785Large ribosomal subunit protein uL11, conserved siteConserved Site
O [auth I]IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
O [auth I]IPR000911Ribosomal protein uL11Family
O [auth I]IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
O [auth I]IPR020784Large ribosomal subunit protein uL11, N-terminalDomain
O [auth I]IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
P [auth J]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
P [auth J]IPR005822Large ribosomal subunit protein uL13Family
P [auth J]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
P [auth J]IPR005755Large ribosomal subunit protein uL13, eukaryotic/archaealFamily
R [auth L]IPR027386Ribosomal uL15, N-terminalHomologous Superfamily
R [auth L]IPR021131Large ribosomal subunit protein uL15/eL18Domain
R [auth L]IPR030878Large ribosomal subunit protein uL15Family
R [auth L]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
R [auth L]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
S [auth M]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
S [auth M]IPR020925Large ribosomal subunit protein eL15, conserved siteConserved Site
S [auth M]IPR024794Large ribosomal subunit protein eL15 core domain superfamilyHomologous Superfamily
S [auth M]IPR020926Large ribosomal subunit protein eL15, archaealFamily
S [auth M]IPR000439Large ribosomal subunit protein eL15Family
B [auth 1]IPR001569Large ribosomal subunit protein eL37Family
B [auth 1]IPR018267Large ribosomal subunit protein eL37, conserved siteConserved Site
B [auth 1]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
B [auth 1]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
T [auth N]IPR005485Large ribosomal subunit protein uL18 eukaryotic/archaealFamily
W [auth Q]IPR022856Large ribosomal subunit protein eL21, archaealFamily
W [auth Q]IPR018259Large ribosomal subunit protein eL21, conserved siteConserved Site
W [auth Q]IPR036948Large ribosomal subunit protein eL21 superfamilyHomologous Superfamily
W [auth Q]IPR001147Large ribosomal subunit protein eL21Family
W [auth Q]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
X [auth R]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
X [auth R]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
X [auth R]IPR001063Large ribosomal subunit protein uL22Family
X [auth R]IPR005721Large ribosomal subunit protein uL22, eukaryotic/archaealFamily
Y [auth S]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
Y [auth S]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
Y [auth S]IPR019985Large ribosomal subunit protein uL23Family
Y [auth S]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
Y [auth S]IPR013025Large ribosomal subunit protein uL23-likeFamily
Z [auth T]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
Z [auth T]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
Z [auth T]IPR005824KOWDomain
Z [auth T]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
Z [auth T]IPR005756Large ribosomal subunit protein uL24, eukaryotic/archaealFamily
Z [auth T]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
AA [auth U]IPR023438Large ribosomal subunit protein eL24Family
AA [auth U]IPR011017TRASH domainDomain
AA [auth U]IPR000988Large ribosomal subunit protein eL24-relatedFamily
AA [auth U]IPR023442Large ribosomal subunit protein eL24, conserved siteConserved Site
AA [auth U]IPR038630Ribosomal protein L24e/L24 superfamilyHomologous Superfamily
BA [auth V]IPR050063Universal ribosomal protein uL29Family
BA [auth V]IPR001854Large ribosomal subunit protein uL29Family
BA [auth V]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
BA [auth V]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
CA [auth W]IPR035808Large ribosomal subunit protein uL30, eukaryotic/archaealDomain
CA [auth W]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
CA [auth W]IPR039699Large ribosomal subunit protein uL30Family
CA [auth W]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
CA [auth W]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
CA [auth W]IPR005997Large ribosomal subunit protein uL30, archaealFamily
C [auth 2]IPR023626Large ribosomal subunit protein eL39 domain superfamilyHomologous Superfamily
C [auth 2]IPR000077Large ribosomal subunit protein eL39Family
C [auth 2]IPR020083Large ribosomal subunit protein eL39, conserved siteConserved Site
DA [auth X]IPR020052Large ribosomal subunit protein eL31, conserved siteConserved Site
DA [auth X]IPR023621Large ribosomal subunit protein eL31 domain superfamilyHomologous Superfamily
DA [auth X]IPR000054Large ribosomal subunit protein eL31Family
FA [auth Z]IPR002674Large ribosomal subunit protein eL43Family
FA [auth Z]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
FA [auth Z]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
FA [auth Z]IPR050522Eukaryotic ribosomal protein eL43Family
G [auth A]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
G [auth A]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
G [auth A]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
G [auth A]IPR023672Large ribosomal subunit protein uL2, archaeal-typeFamily
G [auth A]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
G [auth A]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
G [auth A]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
G [auth A]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
G [auth A]IPR002171Large ribosomal subunit protein uL2Family
H [auth B]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
H [auth B]IPR019928Large ribosomal subunit protein uL3, archaealFamily
H [auth B]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
H [auth B]IPR045077Large ribosomal subunit protein uL3, archaeal/eukaryotic-typeFamily
H [auth B]IPR044892Ribosomal protein L3, domain 3, archaeal-type superfamilyHomologous Superfamily
H [auth B]IPR000597Large ribosomal subunit protein uL3Family
I [auth C]IPR019970Large ribosomal subunit protein uL4, archaeaFamily
I [auth C]IPR002136Large ribosomal subunit protein uL4Family
I [auth C]IPR013000Large ribosomal subunit protein uL4, eukaryotic/archaeal, conserved siteConserved Site
I [auth C]IPR045240Large ribosomal subunit protein uL4, eukaryotic and archaeal typeFamily
I [auth C]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
E [auth 8]004
E [auth 8]DBB RESIDAA0112

PSI-MOD :  (2S,3S,2'R)-3-methyllanthionine MOD:00121
E [auth 8]MEA Parent Component: PHE

RESIDAA0112 , AA0065

PSI-MOD :  (2S,3S,2'R)-3-methyllanthionine MOD:00121 , N-methyl-L-phenylalanine MOD:00074
E [auth 8]MHV RESIDAA0112 , AA0065

E [auth 8]MHW RESIDAA0112 , AA0065

A [auth 0]1MA Parent Component: A

RESIDAA0112 , AA0065

A [auth 0]OMG Parent Component: G

RESIDAA0112 , AA0065

A [auth 0]OMU Parent Component: U

RESIDAA0112 , AA0065

A [auth 0]PSU Parent Component: U

RESIDAA0112 , AA0065

A [auth 0]UR3 Parent Component: U

RESIDAA0112 , AA0065