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 27UR | pdb_000027ur

In situ structure of the side-by-side PSII-LHCII dimer from Oryza sativa (composite)

External Resource: Annotation


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
FD [auth 2o],
GC [auth 2O],
HB [auth 1o],
IA [auth 1O]		PF01716Manganese-stabilising protein / photosystem II polypeptide (MSP)Manganese-stabilising protein / photosystem II polypeptide- Family
GD [auth 2p],
HC [auth 2P],
IB [auth 1p],
JA [auth 1P]		PF01789PsbP (PsbP)PsbPThis entry consists of the 23 kDa subunit of oxygen evolving system of photosystem II or PsbP from various plants (where it is encoded by the nuclear genome) and Cyanobacteria (known as CyanoP). The 23 KDa PsbP protein is required for PSII to be ful ...This entry consists of the 23 kDa subunit of oxygen evolving system of photosystem II or PsbP from various plants (where it is encoded by the nuclear genome) and Cyanobacteria (known as CyanoP). The 23 KDa PsbP protein is required for PSII to be fully operational in vivo, it increases the affinity of the water oxidation site for Cl- and provides the conditions required for high affinity binding of Ca2+ [2]. Structure of CyanoP from Synechocystis sp. revealed that it has an alpha-beta-alpha fold containing 10 beta strands organized into two anti-parallel beta-sheets, packed against alpha-helices. This entry covers the first seven beta-stands (beta1-beta7) and the N-terminal alpha-helix [1].
Domain
LD [auth 2v],
MC [auth 2V],
NB [auth 1v],
OA [auth 1V]		PF04725Photosystem II 10 kDa polypeptide PsbR (PsbR)Photosystem II 10 kDa polypeptide PsbR- Family
MD [auth 2w],
NC [auth 2W],
OB [auth 1w],
PA [auth 1W]		PF07123Photosystem II reaction centre W protein (PsbW) (PsbW)Photosystem II reaction centre W protein (PsbW)- Family
E [auth 04],
I [auth 08],
O [auth 14],
S [auth 18]		PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
ID [auth 2s],
JC [auth 2S],
KB [auth 1s],
LA [auth 1S]		PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
HD [auth 2r],
IC [auth 2R],
JB [auth 1r],
KA [auth 1R]		PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
SC [auth 2b],
TB [auth 2B],
UA [auth 1b],
V [auth 1B]		Photosystem II CP47 reaction center protein
TC [auth 2c],
UB [auth 2C],
VA [auth 1c],
W [auth 1C]		Photosystem II CP43 reaction center protein
VC [auth 2e],
WB [auth 2E],
XA [auth 1e],
Y [auth 1E]		Cytochrome b559 subunit alpha
AB [auth 1h],
BA [auth 1H],
YC [auth 2h],
ZB [auth 2H]		Photosystem II reaction center protein H
AC [auth 2I],
BB [auth 1i],
CA [auth 1I],
ZC [auth 2i]		Photosystem II reaction center protein I-
AD [auth 2j],
BC [auth 2J],
CB [auth 1j],
DA [auth 1J]		Photosystem II reaction center protein J-
BD [auth 2k],
CC [auth 2K],
DB [auth 1k],
EA [auth 1K]		Photosystem II reaction center protein K-
CD [auth 2l],
DC [auth 2L],
EB [auth 1l],
FA [auth 1L]		Photosystem II reaction center protein L-
DD [auth 2m],
EC [auth 2M],
FB [auth 1m],
GA [auth 1M]		Photosystem II reaction center protein M-
FD [auth 2o],
GC [auth 2O],
HB [auth 1o],
IA [auth 1O]		33 kDa subunit of oxygen evolving system of photosystem II
GD [auth 2p],
HC [auth 2P],
IB [auth 1p],
JA [auth 1P]		23 kDa subunit of oxygen evolving system of photosystem II
JD [auth 2t],
KC [auth 2T],
LB [auth 1t],
MA [auth 1T]		Photosystem II reaction center protein T-
KD [auth 2u],
LC [auth 2U],
MB [auth 1u],
NA [auth 1U]		Os02g0581100 protein- - -
LD [auth 2v],
MC [auth 2V],
NB [auth 1v],
OA [auth 1V]		Photosystem II 10 kDa polypeptide, chloroplastic-
MD [auth 2w],
NC [auth 2W],
OB [auth 1w],
PA [auth 1W]		Photosystem II reaction center W protein, chloroplastic-
WC [auth 2f],
XB [auth 2F],
YA [auth 1f],
Z [auth 1F]		Cytochrome b559 subunit beta
UC [auth 2d],
VB [auth 2D],
WA [auth 1d],
X [auth 1D]		Photosystem II D2 protein
RC [auth 2a],
SB [auth 2A],
TA [auth 1a],
U [auth 1A]		Photosystem II protein D1
E [auth 04],
I [auth 08],
O [auth 14],
S [auth 18]		Chlorophyll a-b binding protein, chloroplastic-
PD [auth 2z],
QC [auth 2Z],
RB [auth 1z],
SA [auth 1Z]		Photosystem II reaction center protein Z-
OD [auth 2y],
PC [auth 2Y],
QB [auth 1y],
RA [auth 1Y]		cDNA clone:001-024-H10, full insert sequence- - -
ND [auth 2x],
OC [auth 2X],
PB [auth 1x],
QA [auth 1X]		Os07g0673550 protein-
D [auth 03],
H [auth 07],
N [auth 13],
R [auth 17]		Chlorophyll a/b-binding protein- - -
ID [auth 2s],
JC [auth 2S],
KB [auth 1s],
LA [auth 1S]		Chlorophyll a-b binding protein, chloroplastic-
HD [auth 2r],
IC [auth 2R],
JB [auth 1r],
KA [auth 1R]		Chlorophyll a-b binding protein, chloroplastic
Chlorophyll a-b binding protein 2, chloroplastic-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
SC [auth 2b],
TB [auth 2B],
UA [auth 1b],
V [auth 1B]		IPR036001Photosystem antenna protein-like superfamilyHomologous Superfamily
SC [auth 2b],
TB [auth 2B],
UA [auth 1b],
V [auth 1B]		IPR000932Photosystem antenna protein-likeFamily
SC [auth 2b],
TB [auth 2B],
UA [auth 1b],
V [auth 1B]		IPR017486Photosystem II CP47 reaction centre proteinFamily
TC [auth 2c],
UB [auth 2C],
VA [auth 1c],
W [auth 1C]		IPR036001Photosystem antenna protein-like superfamilyHomologous Superfamily
TC [auth 2c],
UB [auth 2C],
VA [auth 1c],
W [auth 1C]		IPR000932Photosystem antenna protein-likeFamily
TC [auth 2c],
UB [auth 2C],
VA [auth 1c],
W [auth 1C]		IPR005869Photosystem II CP43 reaction centre proteinFamily
TC [auth 2c],
UB [auth 2C],
VA [auth 1c],
W [auth 1C]		IPR044900Photosystem II CP43 reaction centre protein superfamilyHomologous Superfamily
VC [auth 2e],
WB [auth 2E],
XA [auth 1e],
Y [auth 1E]		IPR013081Photosystem II cytochrome b559, N-terminalDomain
VC [auth 2e],
WB [auth 2E],
XA [auth 1e],
Y [auth 1E]		IPR006217Photosystem II cytochrome b559, alpha subunitFamily
VC [auth 2e],
WB [auth 2E],
XA [auth 1e],
Y [auth 1E]		IPR013082Photosystem II cytochrome b559, alpha subunit, lumenal regionDomain
VC [auth 2e],
WB [auth 2E],
XA [auth 1e],
Y [auth 1E]		IPR037025Photosystem II cytochrome b559, alpha subunit superfamilyHomologous Superfamily
VC [auth 2e],
WB [auth 2E],
XA [auth 1e],
Y [auth 1E]		IPR006216Photosystem II cytochrome b559, conserved siteConserved Site
AB [auth 1h],
BA [auth 1H],
YC [auth 2h],
ZB [auth 2H]		IPR036863Photosystem II reaction centre protein H superfamilyHomologous Superfamily
AB [auth 1h],
BA [auth 1H],
YC [auth 2h],
ZB [auth 2H]		IPR001056Photosystem II reaction centre protein HFamily
AC [auth 2I],
BB [auth 1i],
CA [auth 1I],
ZC [auth 2i]		IPR037271Photosystem II PsbI superfamilyHomologous Superfamily
AC [auth 2I],
BB [auth 1i],
CA [auth 1I],
ZC [auth 2i]		IPR003686Photosystem II PsbIFamily
AD [auth 2j],
BC [auth 2J],
CB [auth 1j],
DA [auth 1J]		IPR002682Photosystem II PsbJFamily
AD [auth 2j],
BC [auth 2J],
CB [auth 1j],
DA [auth 1J]		IPR037267Photosystem II PsbJ superfamilyHomologous Superfamily
BD [auth 2k],
CC [auth 2K],
DB [auth 1k],
EA [auth 1K]		IPR037270Photosystem II PsbK superfamilyHomologous Superfamily
BD [auth 2k],
CC [auth 2K],
DB [auth 1k],
EA [auth 1K]		IPR003687Photosystem II PsbKFamily
CD [auth 2l],
DC [auth 2L],
EB [auth 1l],
FA [auth 1L]		IPR003372Photosystem II PsbLFamily
CD [auth 2l],
DC [auth 2L],
EB [auth 1l],
FA [auth 1L]		IPR037266Photosystem II PsbL superfamilyHomologous Superfamily
DD [auth 2m],
EC [auth 2M],
FB [auth 1m],
GA [auth 1M]		IPR007826Photosystem II PsbMFamily
DD [auth 2m],
EC [auth 2M],
FB [auth 1m],
GA [auth 1M]		IPR037269Photosystem II PsbM superfamilyHomologous Superfamily
FD [auth 2o],
GC [auth 2O],
HB [auth 1o],
IA [auth 1O]		IPR011250Outer membrane protein/outer membrane enzyme PagP-like, beta-barrel superfamilyHomologous Superfamily
FD [auth 2o],
GC [auth 2O],
HB [auth 1o],
IA [auth 1O]		IPR002628Photosystem II extrinsic protein OFamily
GD [auth 2p],
HC [auth 2P],
IB [auth 1p],
JA [auth 1P]		IPR006311Twin-arginine translocation pathway, signal sequenceConserved Site
GD [auth 2p],
HC [auth 2P],
IB [auth 1p],
JA [auth 1P]		IPR002683PsbP, C-terminalDomain
GD [auth 2p],
HC [auth 2P],
IB [auth 1p],
JA [auth 1P]		IPR016123Mog1/PsbP, alpha/beta/alpha sandwichHomologous Superfamily
JD [auth 2t],
KC [auth 2T],
LB [auth 1t],
MA [auth 1T]		IPR001743Photosystem II PsbTFamily
JD [auth 2t],
KC [auth 2T],
LB [auth 1t],
MA [auth 1T]		IPR037268Photosystem II PsbT superfamilyHomologous Superfamily
KD [auth 2u],
LC [auth 2U],
MB [auth 1u],
NA [auth 1U]		IPR040296Photosystem II 5kDa protein, chloroplasticFamily
LD [auth 2v],
MC [auth 2V],
NB [auth 1v],
OA [auth 1V]		IPR006814Photosystem II PsbRFamily
MD [auth 2w],
NC [auth 2W],
OB [auth 1w],
PA [auth 1W]		IPR009806Photosystem II PsbW, class 2Family
WC [auth 2f],
XB [auth 2F],
YA [auth 1f],
Z [auth 1F]		IPR006241Photosystem II cytochrome b559, beta subunitFamily
WC [auth 2f],
XB [auth 2F],
YA [auth 1f],
Z [auth 1F]		IPR013081Photosystem II cytochrome b559, N-terminalDomain
WC [auth 2f],
XB [auth 2F],
YA [auth 1f],
Z [auth 1F]		IPR006216Photosystem II cytochrome b559, conserved siteConserved Site
UC [auth 2d],
VB [auth 2D],
WA [auth 1d],
X [auth 1D]		IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
UC [auth 2d],
VB [auth 2D],
WA [auth 1d],
X [auth 1D]		IPR005868Photosystem II D2Family
UC [auth 2d],
VB [auth 2D],
WA [auth 1d],
X [auth 1D]		IPR000484Photosynthetic reaction centre, L/MFamily
UC [auth 2d],
VB [auth 2D],
WA [auth 1d],
X [auth 1D]		IPR055265Photosynthetic reaction centre, L/M, conserved siteConserved Site
UC [auth 2d],
VB [auth 2D],
WA [auth 1d],
X [auth 1D]		IPR055266Photosystem II protein D1/D2Family
RC [auth 2a],
SB [auth 2A],
TA [auth 1a],
U [auth 1A]		IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
RC [auth 2a],
SB [auth 2A],
TA [auth 1a],
U [auth 1A]		IPR005867Photosystem II protein D1Family
RC [auth 2a],
SB [auth 2A],
TA [auth 1a],
U [auth 1A]		IPR000484Photosynthetic reaction centre, L/MFamily
RC [auth 2a],
SB [auth 2A],
TA [auth 1a],
U [auth 1A]		IPR055265Photosynthetic reaction centre, L/M, conserved siteConserved Site
RC [auth 2a],
SB [auth 2A],
TA [auth 1a],
U [auth 1A]		IPR055266Photosystem II protein D1/D2Family
E [auth 04],
I [auth 08],
O [auth 14],
S [auth 18]		IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
E [auth 04],
I [auth 08],
O [auth 14],
S [auth 18]		IPR022796Chlorophyll A-B binding proteinFamily
PD [auth 2z],
QC [auth 2Z],
RB [auth 1z],
SA [auth 1Z]		IPR036512Photosystem II PsbZ superfamilyHomologous Superfamily
PD [auth 2z],
QC [auth 2Z],
RB [auth 1z],
SA [auth 1Z]		IPR002644Photosystem II PsbZ, reaction centreFamily
OD [auth 2y],
PC [auth 2Y],
QB [auth 1y],
RA [auth 1Y]		IPR038760Photosystem II PsbY, plantFamily
OD [auth 2y],
PC [auth 2Y],
QB [auth 1y],
RA [auth 1Y]		IPR009388Photosystem II PsbYFamily
ND [auth 2x],
OC [auth 2X],
PB [auth 1x],
QA [auth 1X]		IPR009518Photosystem II PsbXFamily
D [auth 03],
H [auth 07],
N [auth 13],
R [auth 17]		IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
D [auth 03],
H [auth 07],
N [auth 13],
R [auth 17]		IPR022796Chlorophyll A-B binding proteinFamily
ID [auth 2s],
JC [auth 2S],
KB [auth 1s],
LA [auth 1S]		IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
ID [auth 2s],
JC [auth 2S],
KB [auth 1s],
LA [auth 1S]		IPR022796Chlorophyll A-B binding proteinFamily
HD [auth 2r],
IC [auth 2R],
JB [auth 1r],
KA [auth 1R]		IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
HD [auth 2r],
IC [auth 2R],
JB [auth 1r],
KA [auth 1R]		IPR022796Chlorophyll A-B binding proteinFamily
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
IPR022796Chlorophyll A-B binding proteinFamily