2EQP | pdb_00002eqp

Solution structure of the stn_TNFRSF12A_TNFR domain of Tumor necrosis factor receptor superfamily member 12A precursor

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Fn14 extracellular domain-like	8047325	4005579	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	TNF receptor-like	8106678	3000971	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	stn_TNFRSF12A	e2eqpA1	A: few secondary structure elements	X: EGF-like	H: EGF-related	T: TNF receptor-like	F: stn_TNFRSF12A	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	4.10.400.20	Few Secondary Structures	Irregular	Low-density Lipoprotein Receptor		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF12191	Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain (stn_TNFRSF12A)	Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain	This family of proteins is found in eukaryotes. Proteins in this family are typically between 129 and 184 amino acids in length. This is the stn_TNFRSF12A_TNFR domain from the tumour necrosis factor receptor. The function of this domain is unknown.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Tumor necrosis factor receptor superfamily member 12A	-	developmental process multicellular organismal process regulation of multicellular organismal development regulation of biological process regulation of developmental process blood vessel morphogenesis tube development biological regulation angiogenesis vasculature development regulation of vasculature development circulatory system development anatomical structure morphogenesis multicellular organism development tube morphogenesis developmental process multicellular organismal process regulation of multicellular organismal development regulation of biological process regulation of developmental process blood vessel morphogenesis tube development biological regulation angiogenesis vasculature development regulation of vasculature development circulatory system development anatomical structure morphogenesis multicellular organism development tube morphogenesis regulation of angiogenesis anatomical structure formation involved in morphogenesis anatomical structure development regulation of multicellular organismal process regulation of anatomical structure morphogenesis blood vessel development system development cellular developmental process cell differentiation cellular process wound healing response to stimulus regulation of response to stimulus response to stress regulation of response to stress regulation of wound healing response to wounding regulation of response to wounding cell adhesion substrate-dependent cell migration substrate-dependent cell migration, cell attachment to substrate cell migration cell-substrate adhesion cell motility positive regulation of programmed cell death regulation of cellular process regulation of apoptotic process positive regulation of biological process regulation of programmed cell death cell death positive regulation of apoptotic process apoptotic process programmed cell death positive regulation of cellular process axon extension positive regulation of nervous system development regulation of growth axonogenesis regulation of cellular component size developmental growth cell projection organization regulation of cell differentiation regulation of neurogenesis neuron projection development regulation of cell development positive regulation of developmental process cell projection morphogenesis neuron differentiation neuron projection morphogenesis positive regulation of cell projection organization regulation of biological quality positive regulation of developmental growth regulation of cell projection organization positive regulation of cell development nervous system development developmental growth involved in morphogenesis generation of neurons positive regulation of multicellular organismal process regulation of neuron projection development regulation of cellular component organization positive regulation of cellular component organization plasma membrane bounded cell projection morphogenesis cell development cell growth cell morphogenesis cellular component organization regulation of axon extension regulation of nervous system development neurogenesis regulation of extent of cell growth positive regulation of cell differentiation regulation of axonogenesis positive regulation of neurogenesis positive regulation of axon extension cellular component organization or biogenesis positive regulation of axonogenesis regulation of cell size neuron projection extension regulation of developmental growth plasma membrane bounded cell projection organization developmental cell growth growth positive regulation of cell growth axon development regulation of cell growth cell morphogenesis involved in neuron differentiation positive regulation of growth neuron development regulation of plasma membrane bounded cell projection organization regulation of anatomical structure size cellular response to stimulus cell surface receptor signaling pathway signaling extrinsic apoptotic signaling pathway cell communication apoptotic signaling pathway signal transduction positive regulation of cell communication positive regulation of signal transduction regulation of signal transduction positive regulation of apoptotic signaling pathway positive regulation of response to stimulus regulation of signaling positive regulation of extrinsic apoptotic signaling pathway regulation of extrinsic apoptotic signaling pathway regulation of cell communication regulation of apoptotic signaling pathway positive regulation of signaling	ruffle cell projection cellular anatomical structure cell leading edge plasma membrane bounded cell projection cell surface cell periphery plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR022316	Tumour necrosis factor receptor 12	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: Q9NP84	myocardial infarction Liver Cirrhosis, Experimental subependymal giant cell astrocytoma acute kidney failure breast carcinoma glioblastoma lung carcinoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia type 2 diabetes mellitus congestive heart failure interstitial cystitis malignant ependymoma osteosarcoma psoriasis ductal breast carcinoma in situ myocardial infarction Liver Cirrhosis, Experimental subependymal giant cell astrocytoma acute kidney failure breast carcinoma glioblastoma lung carcinoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia type 2 diabetes mellitus congestive heart failure interstitial cystitis malignant ependymoma osteosarcoma psoriasis ductal breast carcinoma in situ invasive ductal breast carcinoma lung adenocarcinoma malignant glioma ovarian cancer

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.