2FGZ
Crystal Structure Analysis of apo pullulanase from Klebsiella pneumoniae
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d2fgza1 | All beta proteins | Immunoglobulin-like beta-sandwich | E set domains | E-set domains of sugar-utilizing enzymes | Pullulanase PulA | (Klebsiella pneumoniae ) [TaxId: 573 ], | SCOPe (2.08) |
A | d2fgza4 | All beta proteins | Glycosyl hydrolase domain | Glycosyl hydrolase domain | alpha-Amylases, C-terminal beta-sheet domain | Pullulanase PulA | (Klebsiella pneumoniae ) [TaxId: 573 ], | SCOPe (2.08) |
A | d2fgza3 | Alpha and beta proteins (a/b) | TIM beta/alpha-barrel | (Trans)glycosidases | Amylase, catalytic domain | Pullulanase PulA | (Klebsiella pneumoniae ) [TaxId: 573 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | pullul_strch_1st | e2fgzA2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: pullul_strch_1st | ECOD (1.6) |
A | CBM_48 | e2fgzA3 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: CBM_48 | ECOD (1.6) |
A | DUF3372 | e2fgzA4 | A: beta sandwiches | X: Glycosyl hydrolase domain-like | H: Glycosyl hydrolase domain (From Topology) | T: Glycosyl hydrolase domain | F: DUF3372 | ECOD (1.6) |
A | pullul_strch_2nd | e2fgzA5 | A: alpha arrays | X: SP0561-like (From Topology) | H: SP0561-like (From Topology) | T: SP0561-like | F: pullul_strch_2nd | ECOD (1.6) |
A | Alpha-amylase | e2fgzA1 | A: a/b barrels | X: TIM beta/alpha-barrel | H: TIM barrels (From Topology) | T: TIM barrels | F: Alpha-amylase | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.60.40.1130 | Mainly Beta | Sandwich | Immunoglobulin-like | Rab geranylgeranyltransferase alpha-subunit, insert domain | CATH (4.3.0) |
A | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
A | 3.20.20.80 | Alpha Beta | Alpha-Beta Barrel | TIM Barrel | Glycosidases | CATH (4.3.0) |
A | 2.60.40.1180 | Mainly Beta | Sandwich | Immunoglobulin-like | Golgi alpha-mannosidase II | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF18494 | Pullulanase Ins domain (Pullulanase_Ins) | Pullulanase Ins domain | Pullulanases (pullulan 6-glucanohydrolase, EC 3.2.1.41) are debranching enzymes that are able to hydrolyze the alpha-1,6-glycosidic linkage in pullulan, starch, amylopectin, and related oligosaccharides. Type I pullulanases specifically cleave the al ... | Domain | |
PF02922 | Carbohydrate-binding module 48 (Isoamylase N-terminal domain) (CBM_48) | Carbohydrate-binding module 48 (Isoamylase N-terminal domain) | This domain is found in a range of enzymes that act on branched substrates - isoamylase, pullulanase and branching enzyme. This family also contains the beta subunit of 5' AMP activated kinase. | Domain | |
PF11852 | Alpha-1,6-glucosidases, pullulanase-type, C-terminal (Pullul_strch_C) | Alpha-1,6-glucosidases, pullulanase-type, C-terminal | - | Family | |
PF17967 | Pullulanase N2 domain (Pullulanase_N2) | Pullulanase N2 domain | This domain is found close to the N-terminus of the Klebsiella starch debranching pullulanase enzyme [1]. The structure of the domain is a beta sandwich fold. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
Alpha-dextrin endo-1,6-alpha-glucosidase | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR013784 | Carbohydrate-binding-like fold | Homologous Superfamily | |
IPR024561 | Alpha-1,6-glucosidases, pullulanase-type, C-terminal | Domain | |
IPR040671 | Pullulanase, N2 domain | Domain | |
IPR017853 | Glycoside hydrolase superfamily | Homologous Superfamily | |
IPR011839 | Alpha-1,6-glucosidases, pullulanase-type | Domain | |
IPR041111 | Pullulanase, Ins domain | Domain | |
IPR006047 | Glycosyl hydrolase, family 13, catalytic domain | Domain | |
IPR005323 | Pullulanase, carbohydrate-binding module 41 | Domain | |
IPR013783 | Immunoglobulin-like fold | Homologous Superfamily | |
IPR014756 | Immunoglobulin E-set | Homologous Superfamily | |
IPR013780 | Glycosyl hydrolase, all-beta | Homologous Superfamily | |
IPR004193 | Glycoside hydrolase, family 13, N-terminal | Domain |