2GTT | pdb_00002gtt

Crystal structure of the rabies virus nucleoprotein-RNA complex

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2gtta1	All alpha proteins	Rhabdovirus nucleoprotein-like	Rhabdovirus nucleoprotein-like	Rhabdovirus nucleocapsid protein	Nucleoprotein	(Lyssavirus rabies ) [TaxId: 11292 ],	SCOPe (2.08)
B	d2gttb1	All alpha proteins	Rhabdovirus nucleoprotein-like	Rhabdovirus nucleoprotein-like	Rhabdovirus nucleocapsid protein	Nucleoprotein	(Lyssavirus rabies ) [TaxId: 11292 ],	SCOPe (2.08)
D	d2gttd1	All alpha proteins	Rhabdovirus nucleoprotein-like	Rhabdovirus nucleoprotein-like	Rhabdovirus nucleocapsid protein	Nucleoprotein	(Lyssavirus rabies ) [TaxId: 11292 ],	SCOPe (2.08)
E	d2gtte1	All alpha proteins	Rhabdovirus nucleoprotein-like	Rhabdovirus nucleoprotein-like	Rhabdovirus nucleocapsid protein	Nucleoprotein	(Lyssavirus rabies ) [TaxId: 11292 ],	SCOPe (2.08)
F	d2gttf1	All alpha proteins	Rhabdovirus nucleoprotein-like	Rhabdovirus nucleoprotein-like	Rhabdovirus nucleocapsid protein	Nucleoprotein	(Lyssavirus rabies ) [TaxId: 11292 ],	SCOPe (2.08)
G	d2gttg1	All alpha proteins	Rhabdovirus nucleoprotein-like	Rhabdovirus nucleoprotein-like	Rhabdovirus nucleocapsid protein	Nucleoprotein	(Lyssavirus rabies ) [TaxId: 11292 ],	SCOPe (2.08)
H	d2gtth1	All alpha proteins	Rhabdovirus nucleoprotein-like	Rhabdovirus nucleoprotein-like	Rhabdovirus nucleocapsid protein	Nucleoprotein	(Lyssavirus rabies ) [TaxId: 11292 ],	SCOPe (2.08)
I	d2gtti1	All alpha proteins	Rhabdovirus nucleoprotein-like	Rhabdovirus nucleoprotein-like	Rhabdovirus nucleocapsid protein	Nucleoprotein	(Lyssavirus rabies ) [TaxId: 11292 ],	SCOPe (2.08)
J	d2gttj1	All alpha proteins	Rhabdovirus nucleoprotein-like	Rhabdovirus nucleoprotein-like	Rhabdovirus nucleocapsid protein	Nucleoprotein	(Lyssavirus rabies ) [TaxId: 11292 ],	SCOPe (2.08)
K	d2gttk1	All alpha proteins	Rhabdovirus nucleoprotein-like	Rhabdovirus nucleoprotein-like	Rhabdovirus nucleocapsid protein	Nucleoprotein	(Lyssavirus rabies ) [TaxId: 11292 ],	SCOPe (2.08)
L	d2gttl1	All alpha proteins	Rhabdovirus nucleoprotein-like	Rhabdovirus nucleoprotein-like	Rhabdovirus nucleocapsid protein	Nucleoprotein	(Lyssavirus rabies ) [TaxId: 11292 ],	SCOPe (2.08)
M	d2gttm1	All alpha proteins	Rhabdovirus nucleoprotein-like	Rhabdovirus nucleoprotein-like	Rhabdovirus nucleocapsid protein	Nucleoprotein	(Lyssavirus rabies ) [TaxId: 11292 ],	SCOPe (2.08)
N	d2gttn1	All alpha proteins	Rhabdovirus nucleoprotein-like	Rhabdovirus nucleoprotein-like	Rhabdovirus nucleocapsid protein	Nucleoprotein	(Lyssavirus rabies ) [TaxId: 11292 ],	SCOPe (2.08)
O	d2gtto1	All alpha proteins	Rhabdovirus nucleoprotein-like	Rhabdovirus nucleoprotein-like	Rhabdovirus nucleocapsid protein	Nucleoprotein	(Lyssavirus rabies ) [TaxId: 11292 ],	SCOPe (2.08)
P	d2gttp1	All alpha proteins	Rhabdovirus nucleoprotein-like	Rhabdovirus nucleoprotein-like	Rhabdovirus nucleocapsid protein	Nucleoprotein	(Lyssavirus rabies ) [TaxId: 11292 ],	SCOPe (2.08)
Q	d2gttq1	All alpha proteins	Rhabdovirus nucleoprotein-like	Rhabdovirus nucleoprotein-like	Rhabdovirus nucleocapsid protein	Nucleoprotein	(Lyssavirus rabies ) [TaxId: 11292 ],	SCOPe (2.08)
R	d2gttr1	All alpha proteins	Rhabdovirus nucleoprotein-like	Rhabdovirus nucleoprotein-like	Rhabdovirus nucleocapsid protein	Nucleoprotein	(Lyssavirus rabies ) [TaxId: 11292 ],	SCOPe (2.08)
S	d2gtts1	All alpha proteins	Rhabdovirus nucleoprotein-like	Rhabdovirus nucleoprotein-like	Rhabdovirus nucleocapsid protein	Nucleoprotein	(Lyssavirus rabies ) [TaxId: 11292 ],	SCOPe (2.08)
T	d2gttt1	All alpha proteins	Rhabdovirus nucleoprotein-like	Rhabdovirus nucleoprotein-like	Rhabdovirus nucleocapsid protein	Nucleoprotein	(Lyssavirus rabies ) [TaxId: 11292 ],	SCOPe (2.08)
U	d2gttu1	All alpha proteins	Rhabdovirus nucleoprotein-like	Rhabdovirus nucleoprotein-like	Rhabdovirus nucleocapsid protein	Nucleoprotein	(Lyssavirus rabies ) [TaxId: 11292 ],	SCOPe (2.08)
V	d2gttv1	All alpha proteins	Rhabdovirus nucleoprotein-like	Rhabdovirus nucleoprotein-like	Rhabdovirus nucleocapsid protein	Nucleoprotein	(Lyssavirus rabies ) [TaxId: 11292 ],	SCOPe (2.08)
C	d2gttc1	All alpha proteins	Rhabdovirus nucleoprotein-like	Rhabdovirus nucleoprotein-like	Rhabdovirus nucleocapsid protein	Nucleoprotein	(Lyssavirus rabies ) [TaxId: 11292 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Rhabdovirus nucleocapsid protein	8029691	4001522	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Rhabdovirus nucleoprotein-like	8042070	3001763	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	Rhabdovirus nucleoprotein-like	8042070	3001763	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Rhabdovirus nucleoprotein-like	8042070	3001763	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Rhabdovirus nucleoprotein-like	8042070	3001763	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Rhabdovirus nucleoprotein-like	8042070	3001763	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Rhabdovirus nucleoprotein-like	8042070	3001763	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Rhabdovirus nucleoprotein-like	8042070	3001763	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Rhabdovirus nucleoprotein-like	8042070	3001763	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Rhabdovirus nucleoprotein-like	8042070	3001763	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Rhabdovirus nucleoprotein-like	8042070	3001763	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Rhabdovirus nucleoprotein-like	8042070	3001763	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Rhabdovirus nucleoprotein-like	8042070	3001763	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Rhabdovirus nucleoprotein-like	8042070	3001763	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	Rhabdovirus nucleoprotein-like	8042070	3001763	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	Rhabdovirus nucleoprotein-like	8042070	3001763	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	Rhabdovirus nucleoprotein-like	8042070	3001763	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	Rhabdovirus nucleoprotein-like	8042070	3001763	SCOP2B (2022-06-29)
S	SCOP2B Superfamily	Rhabdovirus nucleoprotein-like	8042070	3001763	SCOP2B (2022-06-29)
T	SCOP2B Superfamily	Rhabdovirus nucleoprotein-like	8042070	3001763	SCOP2B (2022-06-29)
U	SCOP2B Superfamily	Rhabdovirus nucleoprotein-like	8042070	3001763	SCOP2B (2022-06-29)
V	SCOP2B Superfamily	Rhabdovirus nucleoprotein-like	8042070	3001763	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Rhabdovirus nucleoprotein-like	8042070	3001763	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Rhabdo_ncap	e2gttA1	A: a+b two layers	X: P40 nucleoprotein-like	H: Rhabdovirus nucleocapsid protein	T: Rhabdovirus nucleocapsid protein	F: Rhabdo_ncap	ECOD (develop294)
B	Ion_trans_2	e2gttB1	A: alpha bundles	X: EGF-like	H: Rpp14/Pop5-like	T: Rpp14/Pop5-like	F: Ion_trans_2	ECOD (develop294)
D	Ion_trans_2	e2gttD1	A: alpha bundles	X: EGF-like	H: Rpp14/Pop5-like	T: Rpp14/Pop5-like	F: Ion_trans_2	ECOD (develop294)
E	Ion_trans_2	e2gttE1	A: alpha bundles	X: EGF-like	H: Rpp14/Pop5-like	T: Rpp14/Pop5-like	F: Ion_trans_2	ECOD (develop294)
F	ClpB_D2-small	e2gttF1	A: alpha bundles	X: YrdC/RibB	H: SH3	T: SH3	F: ClpB_D2-small	ECOD (develop294)
G	Ion_trans_2	e2gttG1	A: alpha bundles	X: EGF-like	H: Rpp14/Pop5-like	T: Rpp14/Pop5-like	F: Ion_trans_2	ECOD (develop294)
H	Ion_trans_2	e2gttH1	A: alpha bundles	X: EGF-like	H: Rpp14/Pop5-like	T: Rpp14/Pop5-like	F: Ion_trans_2	ECOD (develop294)
I	Ion_trans_2	e2gttI1	A: alpha bundles	X: EGF-like	H: Rpp14/Pop5-like	T: Rpp14/Pop5-like	F: Ion_trans_2	ECOD (develop294)
J	ClpB_D2-small	e2gttJ1	A: alpha bundles	X: YrdC/RibB	H: SH3	T: SH3	F: ClpB_D2-small	ECOD (develop294)
K	Ion_trans_2	e2gttK1	A: alpha bundles	X: EGF-like	H: Rpp14/Pop5-like	T: Rpp14/Pop5-like	F: Ion_trans_2	ECOD (develop294)
L	ClpB_D2-small	e2gttL1	A: alpha bundles	X: YrdC/RibB	H: SH3	T: SH3	F: ClpB_D2-small	ECOD (develop294)
M	Ion_trans_2	e2gttM1	A: alpha bundles	X: EGF-like	H: Rpp14/Pop5-like	T: Rpp14/Pop5-like	F: Ion_trans_2	ECOD (develop294)
N	ClpB_D2-small	e2gttN1	A: alpha bundles	X: YrdC/RibB	H: SH3	T: SH3	F: ClpB_D2-small	ECOD (develop294)
O	Ion_trans_2	e2gttO1	A: alpha bundles	X: EGF-like	H: Rpp14/Pop5-like	T: Rpp14/Pop5-like	F: Ion_trans_2	ECOD (develop294)
P	Ion_trans_2	e2gttP1	A: alpha bundles	X: EGF-like	H: Rpp14/Pop5-like	T: Rpp14/Pop5-like	F: Ion_trans_2	ECOD (develop294)
Q	Ion_trans_2	e2gttQ1	A: alpha bundles	X: EGF-like	H: Rpp14/Pop5-like	T: Rpp14/Pop5-like	F: Ion_trans_2	ECOD (develop294)
R	Ion_trans_2	e2gttR1	A: alpha bundles	X: EGF-like	H: Rpp14/Pop5-like	T: Rpp14/Pop5-like	F: Ion_trans_2	ECOD (develop294)
S	Ion_trans_2	e2gttS1	A: alpha bundles	X: EGF-like	H: Rpp14/Pop5-like	T: Rpp14/Pop5-like	F: Ion_trans_2	ECOD (develop294)
T	Ion_trans_2	e2gttT1	A: alpha bundles	X: EGF-like	H: Rpp14/Pop5-like	T: Rpp14/Pop5-like	F: Ion_trans_2	ECOD (develop294)
U	Ion_trans_2	e2gttU1	A: alpha bundles	X: EGF-like	H: Rpp14/Pop5-like	T: Rpp14/Pop5-like	F: Ion_trans_2	ECOD (develop294)
V	Ion_trans_2	e2gttV1	A: alpha bundles	X: EGF-like	H: Rpp14/Pop5-like	T: Rpp14/Pop5-like	F: Ion_trans_2	ECOD (develop294)
C	Ion_trans_2	e2gttC1	A: alpha bundles	X: EGF-like	H: Rpp14/Pop5-like	T: Rpp14/Pop5-like	F: Ion_trans_2	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.3570.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like fold	Rhabdovirus nucleocapsid protein like domain	CATH (4.3.0)
A	1.10.3610.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like	Nucleoprotein	CATH (4.3.0)
B	1.10.3570.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like fold	Rhabdovirus nucleocapsid protein like domain	CATH (4.3.0)
B	1.10.3610.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like	Nucleoprotein	CATH (4.3.0)
D	1.10.3570.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like fold	Rhabdovirus nucleocapsid protein like domain	CATH (4.3.0)
D	1.10.3610.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like	Nucleoprotein	CATH (4.3.0)
E	1.10.3570.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like fold	Rhabdovirus nucleocapsid protein like domain	CATH (4.3.0)
E	1.10.3610.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like	Nucleoprotein	CATH (4.3.0)
F	1.10.3570.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like fold	Rhabdovirus nucleocapsid protein like domain	CATH (4.3.0)
F	1.10.3610.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like	Nucleoprotein	CATH (4.3.0)
G	1.10.3570.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like fold	Rhabdovirus nucleocapsid protein like domain	CATH (4.3.0)
G	1.10.3610.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like	Nucleoprotein	CATH (4.3.0)
H	1.10.3570.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like fold	Rhabdovirus nucleocapsid protein like domain	CATH (4.3.0)
H	1.10.3610.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like	Nucleoprotein	CATH (4.3.0)
I	1.10.3570.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like fold	Rhabdovirus nucleocapsid protein like domain	CATH (4.3.0)
I	1.10.3610.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like	Nucleoprotein	CATH (4.3.0)
J	1.10.3570.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like fold	Rhabdovirus nucleocapsid protein like domain	CATH (4.3.0)
J	1.10.3610.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like	Nucleoprotein	CATH (4.3.0)
K	1.10.3570.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like fold	Rhabdovirus nucleocapsid protein like domain	CATH (4.3.0)
K	1.10.3610.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like	Nucleoprotein	CATH (4.3.0)
L	1.10.3570.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like fold	Rhabdovirus nucleocapsid protein like domain	CATH (4.3.0)
L	1.10.3610.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like	Nucleoprotein	CATH (4.3.0)
M	1.10.3570.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like fold	Rhabdovirus nucleocapsid protein like domain	CATH (4.3.0)
M	1.10.3610.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like	Nucleoprotein	CATH (4.3.0)
N	1.10.3570.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like fold	Rhabdovirus nucleocapsid protein like domain	CATH (4.3.0)
N	1.10.3610.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like	Nucleoprotein	CATH (4.3.0)
O	1.10.3570.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like fold	Rhabdovirus nucleocapsid protein like domain	CATH (4.3.0)
O	1.10.3610.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like	Nucleoprotein	CATH (4.3.0)
P	1.10.3570.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like fold	Rhabdovirus nucleocapsid protein like domain	CATH (4.3.0)
P	1.10.3610.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like	Nucleoprotein	CATH (4.3.0)
Q	1.10.3570.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like fold	Rhabdovirus nucleocapsid protein like domain	CATH (4.3.0)
Q	1.10.3610.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like	Nucleoprotein	CATH (4.3.0)
R	1.10.3570.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like fold	Rhabdovirus nucleocapsid protein like domain	CATH (4.3.0)
R	1.10.3610.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like	Nucleoprotein	CATH (4.3.0)
S	1.10.3570.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like fold	Rhabdovirus nucleocapsid protein like domain	CATH (4.3.0)
S	1.10.3610.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like	Nucleoprotein	CATH (4.3.0)
T	1.10.3570.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like fold	Rhabdovirus nucleocapsid protein like domain	CATH (4.3.0)
T	1.10.3610.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like	Nucleoprotein	CATH (4.3.0)
U	1.10.3570.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like fold	Rhabdovirus nucleocapsid protein like domain	CATH (4.3.0)
U	1.10.3610.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like	Nucleoprotein	CATH (4.3.0)
V	1.10.3570.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like fold	Rhabdovirus nucleocapsid protein like domain	CATH (4.3.0)
V	1.10.3610.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like	Nucleoprotein	CATH (4.3.0)
C	1.10.3570.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like fold	Rhabdovirus nucleocapsid protein like domain	CATH (4.3.0)
C	1.10.3610.10	Mainly Alpha	Orthogonal Bundle	Rhabdovirus nucleoprotein-like	Nucleoprotein	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
W	RNA (99-MER)	-	-	-
X	RNA (99-MER)	-	-	-
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V	Nucleoprotein	RNA binding binding nucleic acid binding	-	protein-containing complex ribonucleoprotein complex viral nucleocapsid viral capsid virion component host cellular component host intracellular part cellular anatomical structure host cell cytoplasm host cell part host intracellular region other organism part helical viral capsid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V	IPR035961	Rhabdovirus nucleoprotein-like	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V	IPR000448	Rhabdovirus nucleocapsid	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V	IPR023330	Rhabdovirus nucleocapsid, N-terminal	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V	IPR023331	Rhabdovirus nucleocapsid, C-terminal	Homologous Superfamily