2ISA | pdb_00002isa

Crystal Structure of Vibrio salmonicida catalase

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
H	d2isah_	Multi-domain proteins (alpha and beta)	Heme-dependent catalase-like	Heme-dependent catalase-like	Heme-dependent catalases	automated matches	(Aliivibrio salmonicida LFI1238 ) [TaxId: 316275 ],	SCOPe (2.08)
G	d2isag_	Multi-domain proteins (alpha and beta)	Heme-dependent catalase-like	Heme-dependent catalase-like	Heme-dependent catalases	automated matches	(Aliivibrio salmonicida LFI1238 ) [TaxId: 316275 ],	SCOPe (2.08)
F	d2isaf_	Multi-domain proteins (alpha and beta)	Heme-dependent catalase-like	Heme-dependent catalase-like	Heme-dependent catalases	automated matches	(Aliivibrio salmonicida LFI1238 ) [TaxId: 316275 ],	SCOPe (2.08)
E	d2isae_	Multi-domain proteins (alpha and beta)	Heme-dependent catalase-like	Heme-dependent catalase-like	Heme-dependent catalases	automated matches	(Aliivibrio salmonicida LFI1238 ) [TaxId: 316275 ],	SCOPe (2.08)
D	d2isad_	Multi-domain proteins (alpha and beta)	Heme-dependent catalase-like	Heme-dependent catalase-like	Heme-dependent catalases	automated matches	(Aliivibrio salmonicida LFI1238 ) [TaxId: 316275 ],	SCOPe (2.08)
C	d2isac_	Multi-domain proteins (alpha and beta)	Heme-dependent catalase-like	Heme-dependent catalase-like	Heme-dependent catalases	automated matches	(Aliivibrio salmonicida LFI1238 ) [TaxId: 316275 ],	SCOPe (2.08)
B	d2isab_	Multi-domain proteins (alpha and beta)	Heme-dependent catalase-like	Heme-dependent catalase-like	Heme-dependent catalases	automated matches	(Aliivibrio salmonicida LFI1238 ) [TaxId: 316275 ],	SCOPe (2.08)
A	d2isaa_	Multi-domain proteins (alpha and beta)	Heme-dependent catalase-like	Heme-dependent catalase-like	Heme-dependent catalases	automated matches	(Aliivibrio salmonicida LFI1238 ) [TaxId: 316275 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
H	SCOP2B Superfamily	Heme-dependent catalase-like	8068989	3001681	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Heme-dependent catalase-like	8068989	3001681	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Heme-dependent catalase-like	8068989	3001681	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Heme-dependent catalase-like	8068989	3001681	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Heme-dependent catalase-like	8068989	3001681	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Heme-dependent catalase-like	8068989	3001681	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Heme-dependent catalase-like	8068989	3001681	SCOP2B (2022-06-29)
A	SCOP2 Family	Heme-dependent catalases	8068988	4002736	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Heme-dependent catalase-like	8068989	3001681	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	Peptidase_M49	e2isaH4	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Subtilisin-like	T: Subtilisin-like	F: Peptidase_M49	ECOD (v294.1)
G	Peptidase_M49	e2isaG4	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Subtilisin-like	T: Subtilisin-like	F: Peptidase_M49	ECOD (v294.1)
F	Peptidase_M49	e2isaF4	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Subtilisin-like	T: Subtilisin-like	F: Peptidase_M49	ECOD (v294.1)
E	Peptidase_M49	e2isaE4	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Subtilisin-like	T: Subtilisin-like	F: Peptidase_M49	ECOD (v294.1)
D	Peptidase_M49	e2isaD4	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Subtilisin-like	T: Subtilisin-like	F: Peptidase_M49	ECOD (v294.1)
C	Peptidase_M49	e2isaC4	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Subtilisin-like	T: Subtilisin-like	F: Peptidase_M49	ECOD (v294.1)
B	Peptidase_M49	e2isaB4	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Subtilisin-like	T: Subtilisin-like	F: Peptidase_M49	ECOD (v294.1)
A	Peptidase_M49	e2isaA4	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Subtilisin-like	T: Subtilisin-like	F: Peptidase_M49	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
H	2.40.180.10	Mainly Beta	Beta Barrel	Catalase HpII, Chain A, domain 1	Catalase core domain	CATH (4.3.0)
G	2.40.180.10	Mainly Beta	Beta Barrel	Catalase HpII, Chain A, domain 1	Catalase core domain	CATH (4.3.0)
F	2.40.180.10	Mainly Beta	Beta Barrel	Catalase HpII, Chain A, domain 1	Catalase core domain	CATH (4.3.0)
E	2.40.180.10	Mainly Beta	Beta Barrel	Catalase HpII, Chain A, domain 1	Catalase core domain	CATH (4.3.0)
D	2.40.180.10	Mainly Beta	Beta Barrel	Catalase HpII, Chain A, domain 1	Catalase core domain	CATH (4.3.0)
C	2.40.180.10	Mainly Beta	Beta Barrel	Catalase HpII, Chain A, domain 1	Catalase core domain	CATH (4.3.0)
B	2.40.180.10	Mainly Beta	Beta Barrel	Catalase HpII, Chain A, domain 1	Catalase core domain	CATH (4.3.0)
A	2.40.180.10	Mainly Beta	Beta Barrel	Catalase HpII, Chain A, domain 1	Catalase core domain	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	Catalase	peroxidase activity oxidoreductase activity antioxidant activity catalase activity oxidoreductase activity, acting on peroxide as acceptor catalytic activity binding tetrapyrrole binding heme binding cation binding ion binding metal ion binding small molecule binding	catabolic process hydrogen peroxide metabolic process reactive oxygen species metabolic process metabolic process cellular process hydrogen peroxide catabolic process response to hydrogen peroxide response to oxidative stress response to stimulus response to stress response to chemical response to oxygen-containing compound response to reactive oxygen species	cellular anatomical structure periplasmic space intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR024708	Catalase active site	Active Site
A, B, C, D, E A, B, C, D, E, F, G, H	IPR010582	Catalase immune-responsive domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR002226	Catalase haem-binding site	Binding Site
A, B, C, D, E A, B, C, D, E, F, G, H	IPR020835	Catalase superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR024711	Catalase, mono-functional, haem-containing, clades 1 and 3	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR011614	Catalase core domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR018028	Catalase, mono-functional, haem-containing	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR040333	Catalase, clade 3	Family

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
A, B, C, D, E A, B, C, D, E, F, G, H	OMT	Parent Component: MET RESID: AA0251 PSI-MOD : L-methionine sulfone MOD:00256

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.