Annotations: 2JQQ

Solution structure of Saccharomyces cerevisiae conserved oligomeric Golgi subunit 2 protein (Cog2p)

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	COG2-like	8047813	4005833	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Cullin repeat-like	8052699	3000059	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	COG2p_C	e2jqqA1	A: alpha arrays	X: STAT-like	H: t-snare proteins	T: t-snare proteins	F: COG2p_C	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.20.58.1240	Mainly Alpha	Up-down Bundle	Methane Monooxygenase Hydroxylase	Chain G, domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF22431	COG2p C-terminal (COG2p_C)	COG2p C-terminal	This entry represents the C-terminal region of COG2 from yeast [1], a component of the peripheral membrane COG complex involved in intra-Golgi protein trafficking [1]. This domain adopts a six-helix bundle that seems to play an important structural r ...	This entry represents the C-terminal region of COG2 from yeast [1], a component of the peripheral membrane COG complex involved in intra-Golgi protein trafficking [1]. This domain adopts a six-helix bundle that seems to play an important structural role in the COG complex [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Conserved oligomeric Golgi complex subunit 2	-	localization transport cellular process establishment of localization Golgi vesicle transport vesicle-mediated transport intra-Golgi vesicle-mediated transport catabolic process macroautophagy autophagy metabolic process process utilizing autophagic mechanism autophagy of peroxisome pexophagy localization transport cellular process establishment of localization Golgi vesicle transport vesicle-mediated transport intra-Golgi vesicle-mediated transport catabolic process macroautophagy autophagy metabolic process process utilizing autophagic mechanism autophagy of peroxisome pexophagy cellular localization establishment of localization in cell intracellular transport endoplasmic reticulum to Golgi vesicle-mediated transport retrograde transport, vesicle recycling within Golgi establishment of protein localization protein targeting establishment of protein localization to vacuole protein localization to vacuole cytoplasm to vacuole targeting by the Cvt pathway establishment of protein localization to organelle protein transport protein localization to organelle macromolecule localization vacuolar transport intracellular protein localization protein targeting to vacuole intracellular protein transport	membrane-bounded organelle protein-containing complex intracellular anatomical structure COG complex Golgi apparatus intracellular membrane-bounded organelle endomembrane system vesicle tethering complex intracellular organelle cellular anatomical structure organelle cytoplasm cytosol Golgi membrane membrane-bounded organelle protein-containing complex intracellular anatomical structure COG complex Golgi apparatus intracellular membrane-bounded organelle endomembrane system vesicle tethering complex intracellular organelle cellular anatomical structure organelle cytoplasm cytosol Golgi membrane membrane bounding membrane of organelle organelle membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR024602	Conserved oligomeric Golgi complex, subunit 2, N-terminal	Domain
A	IPR054494	Conserved oligomeric Golgi complex subunit 2, C-terminal	Domain