2LH0 | pdb_00002lh0

NMR structure of the histone-interacting N-terminal homodimeric region of Rtt106

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Rtt106_N	e2lh0B1	A: a/b three-layered sandwiches	X: Kringle-like	H: Get5 carboxyl domain	T: Get5 carboxyl domain	F: Rtt106_N	ECOD (v294.1)
A	Rtt106_N	e2lh0A1	A: a/b three-layered sandwiches	X: Kringle-like	H: Get5 carboxyl domain	T: Get5 carboxyl domain	F: Rtt106_N	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	6.10.10.70	Special	Helix non-globular	Helicase, Ruva Protein	domain 3	CATH (4.3.0)
A	6.10.10.70	Special	Helix non-globular	Helicase, Ruva Protein	domain 3	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF18215	Histone chaperone Rtt106 N-terminal domain (Rtt106_N)	Histone chaperone Rtt106 N-terminal domain	This is the N-terminal domain of Rtt106 in Saccharomyces cerevisiae. Rtt106 is a histone chaperone that contributes to the deposition of newly synthesized acetylated Histone 3 Lysine 56 (H3K56ac) carrying H3-H4 complex on replicating DNA. The N-termi ...	This is the N-terminal domain of Rtt106 in Saccharomyces cerevisiae. Rtt106 is a histone chaperone that contributes to the deposition of newly synthesized acetylated Histone 3 Lysine 56 (H3K56ac) carrying H3-H4 complex on replicating DNA. The N-terminal domain of Rtt106 homodimerizes and interacts with H3-H4 independently of acetylation [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Histone chaperone RTT106	protein binding binding histone binding DNA binding double-stranded DNA binding nucleic acid binding identical protein binding protein-containing complex binding chromatin binding nucleosome binding	cellular component organization chromatin organization DNA replication-dependent chromatin assembly cellular process cellular component organization or biogenesis regulation of cellular process negative regulation of biological process cellular component biogenesis cellular component assembly negative regulation of cellular process chromatin remodeling negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of biological process cellular component organization chromatin organization DNA replication-dependent chromatin assembly cellular process cellular component organization or biogenesis regulation of cellular process negative regulation of biological process cellular component biogenesis cellular component assembly negative regulation of cellular process chromatin remodeling negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of biological process heterochromatin formation epigenetic regulation of gene expression negative regulation of metabolic process biological regulation heterochromatin organization regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of gene expression negative regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process negative regulation of gene expression, epigenetic regulation of macromolecule biosynthetic process metabolic process macromolecule metabolic process regulation of metabolic process transcription elongation by RNA polymerase II RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process DNA-templated transcription elongation transcription by RNA polymerase II regulation of primary metabolic process negative regulation of RNA biosynthetic process regulation of RNA metabolic process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of transcription by RNA polymerase II negative regulation of DNA-templated transcription negative regulation of transcription by RNA polymerase II regulation of DNA-templated transcription negative regulation of RNA metabolic process transposition	intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle chromosome membrane-bounded organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR050454	RTT106/SSRP1 Histone Chaperone/FACT Complex	Family
A, B	IPR040770	Rtt106, pleckstrin homology domain	Domain
A, B	IPR011993	PH-like domain superfamily	Homologous Superfamily
A, B	IPR040993	Histone chaperone Rtt106, N-terminal domain	Domain
A, B	IPR013719	Histone chaperone RTT106/FACT complex subunit SPT16-like, middle domain	Domain
A, B	IPR044891	Histone chaperone Rtt106, N-terminal domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.